Cow genome map
| Conread name: | mE4-MI-P-E4-ahd-g-01-1-UM.s1 |
| Conread position: | 1-179 |
| Cow position: | chr12:42232485-42232666 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-206 |
| Cow position: | chr12:18936004-18936212 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-258 |
| Cow position: | chr12:2242812-2242555 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-260 |
| Cow position: | chr12:23294410-23294670 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 227 |
| Conread position: | 1-263 |
| Cow position: | chr12:32340081-32339816 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-266 |
| Cow position: | chr12:1007191-1007459 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 86, 233 |
| Conread position: | 1-266 |
| Cow position: | chr12:21888867-21888599 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-281 |
| Cow position: | chr12:62032-61746 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-281 |
| Cow position: | chr12:33925522-33925236 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-283 |
| Cow position: | chr12:47803348-47803616 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 266, 73 |
| Conread position: | 1-297 |
| Cow position: | chr12:28737701-28738002 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 202, 24 |
| Conread position: | 1-297 |
| Cow position: | chr12:32656724-32657028 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-297 |
| Cow position: | chr12:41973597-41973295 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 255 |
| Conread position: | 1-298 |
| Cow position: | chr12:31217361-31217656 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 107, 85 |
| Conread position: | 1-300 |
| Cow position: | chr12:12754981-12754675 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 165 |
| Conread position: | 1-304 |
| Cow position: | chr12:7674077-7674386 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr12:10075837-10076142 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 117, 63 |
| Conread position: | 1-304 |
| Cow position: | chr12:15720387-15720082 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 123, 104 |
| Conread position: | 1-304 |
| Cow position: | chr12:22979716-22979409 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 59 |
| Conread position: | 1-304 |
| Cow position: | chr12:35547953-35547651 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-304 |
| Cow position: | chr12:38893539-38893848 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-305 |
| Cow position: | chr12:14568639-14568340 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 266, 117 |
| Conread position: | 1-305 |
| Cow position: | chr12:46111942-46111633 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 117, 288 |
| Conread position: | 1-307 |
| Cow position: | chr12:15231210-15231518 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 137 |
| Conread position: | 1-307 |
| Cow position: | chr12:15820907-15821210 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-308 |
| Cow position: | chr12:10931260-10931578 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-308 |
| Cow position: | chr12:27506474-27506157 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-309 |
| Cow position: | chr12:25148442-25148129 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 24 |
| Conread position: | 1-317 |
| Cow position: | chr12:3717098-3716772 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-317 |
| Cow position: | chr12:18585848-18586174 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-320 |
| Cow position: | chr12:14423525-14423849 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-320 |
| Cow position: | chr12:24205710-24206022 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 117, 73 |
| Conread position: | 1-328 |
| Cow position: | chr12:23138153-23137820 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-328 |
| Cow position: | chr12:36445562-36445894 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-330 |
| Cow position: | chr12:258905-259241 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr12:5107233-5107569 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr12:8839429-8839765 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-330 |
| Cow position: | chr12:16302163-16301827 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr12:17718476-17718810 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr12:27958350-27958014 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr12:39930344-39930676 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-332 |
| Cow position: | chr12:27994276-27994610 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 292 |
| Conread position: | 1-334 |
| Cow position: | chr12:1405624-1405962 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-334 |
| Cow position: | chr12:21665311-21665649 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-335 |
| Cow position: | chr12:1511588-1511253 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 1-336 |
| Cow position: | chr12:36287837-36287502 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 59 |
| Conread position: | 1-376 |
| Cow position: | chr12:27929616-27929247 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 117, 231 |
| Conread position: | 2-316 |
| Cow position: | chr12:30686918-30687237 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 296 |
| Conread position: | 3-317 |
| Cow position: | chr12:20459542-20459221 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 4-317 |
| Cow position: | chr12:22517674-22517357 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 4-332 |
| Cow position: | chr12:21432518-21432851 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 180 |
| Conread position: | 11-176 |
| Cow position: | chr12:43602071-43601903 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-304 |
| Cow position: | chr12:34176740-34177039 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 11-307 |
| Cow position: | chr12:31829264-31828962 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-317 |
| Cow position: | chr12:22480310-22480625 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 11-319 |
| Cow position: | chr12:3180594-3180912 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 11-323 |
| Cow position: | chr12:7885702-7885381 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 103, 201 |
| Conread position: | 11-330 |
| Cow position: | chr12:2228756-2229082 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-330 |
| Cow position: | chr12:21452792-21452466 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-343 |
| Cow position: | chr12:19496189-19495854 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 100, 109 |
| Conread position: | 12-318 |
| Cow position: | chr12:28763827-28763514 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 106, 147 |
| Conread position: | 25-311 |
| Cow position: | chr12:31261210-31260920 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 265 |
| Conread position: | 26-308 |
| Cow position: | chr12:5226434-5226722 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 36-297 |
| Cow position: | chr12:21904569-21904834 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 82, 163 |
Show alignments to all cow chromosomes.