Cow genome map
| Conread name: | mE4-MI-P-E4-ahd-g-01-1-UM.s1 |
| Conread position: | 1-236 |
| Cow position: | chr14:16997201-16996963 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-238 |
| Cow position: | chr14:16916890-16916650 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-254 |
| Cow position: | chr14:24797853-24797597 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-258 |
| Cow position: | chr14:47567802-47568060 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 113, 78 |
| Conread position: | 1-266 |
| Cow position: | chr14:12858800-12858532 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-281 |
| Cow position: | chr14:14271194-14271480 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-281 |
| Cow position: | chr14:37443805-37444091 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-282 |
| Cow position: | chr14:31155662-31155949 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 247 |
| Conread position: | 1-282 |
| Cow position: | chr14:34168136-34168422 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 1-282 |
| Cow position: | chr14:50137108-50137392 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 114, 59 |
| Conread position: | 1-291 |
| Cow position: | chr14:46752748-46752452 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 121, 92 |
| Conread position: | 1-294 |
| Cow position: | chr14:8901987-8902283 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 190, 118 |
| Conread position: | 1-296 |
| Cow position: | chr14:37882830-37883135 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-297 |
| Cow position: | chr14:12066611-12066307 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-298 |
| Cow position: | chr14:46849203-46848908 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 104, 60 |
| Conread position: | 1-300 |
| Cow position: | chr14:9449695-9449393 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-300 |
| Cow position: | chr14:39301304-39301602 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 68, 119 |
| Conread position: | 1-304 |
| Cow position: | chr14:8396943-8396634 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr14:9482788-9483093 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 117, 246 |
| Conread position: | 1-304 |
| Cow position: | chr14:31882051-31881743 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr14:33835173-33834863 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 217 |
| Conread position: | 1-304 |
| Cow position: | chr14:34629358-34629049 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-304 |
| Cow position: | chr14:38047017-38047322 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 118 |
| Conread position: | 1-304 |
| Cow position: | chr14:38651748-38652057 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr14:40968992-40969301 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-304 |
| Cow position: | chr14:46960224-46960533 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-304 |
| Cow position: | chr14:47873287-47872978 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-305 |
| Cow position: | chr14:9047675-9047978 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 266, 118 |
| Conread position: | 1-305 |
| Cow position: | chr14:11151079-11150770 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 289 |
| Conread position: | 1-305 |
| Cow position: | chr14:12833687-12833996 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 289 |
| Conread position: | 1-307 |
| Cow position: | chr14:5500771-5501075 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 107 |
| Conread position: | 1-307 |
| Cow position: | chr14:9811518-9811829 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1-307 |
| Cow position: | chr14:19489818-19490135 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 1-308 |
| Cow position: | chr14:1726983-1727298 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 217 |
| Conread position: | 1-308 |
| Cow position: | chr14:10310396-10310713 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-308 |
| Cow position: | chr14:13860704-13860382 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-312 |
| Cow position: | chr14:28350861-28350544 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-312 |
| Cow position: | chr14:29044836-29044519 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-314 |
| Cow position: | chr14:45576483-45576782 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 117, 133 |
| Conread position: | 1-316 |
| Cow position: | chr14:24990443-24990123 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 83, 218 |
| Conread position: | 1-317 |
| Cow position: | chr14:12740212-12739886 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-317 |
| Cow position: | chr14:20786221-20786545 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 117, 204 |
| Conread position: | 1-317 |
| Cow position: | chr14:28993511-28993190 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 249 |
| Conread position: | 1-317 |
| Cow position: | chr14:45025792-45025466 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-317 |
| Cow position: | chr14:45084752-45085070 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 118 |
| Conread position: | 1-317 |
| Cow position: | chr14:46302741-46303068 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-323 |
| Cow position: | chr14:7646952-7647278 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 1-323 |
| Cow position: | chr14:28116898-28117226 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 88 |
| Conread position: | 1-328 |
| Cow position: | chr14:22026937-22026603 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 117, 68 |
| Conread position: | 1-328 |
| Cow position: | chr14:44584081-44584407 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 117, 50 |
| Conread position: | 1-330 |
| Cow position: | chr14:5645243-5645581 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1-330 |
| Cow position: | chr14:13581706-13582039 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 307 |
| Conread position: | 1-330 |
| Cow position: | chr14:19523889-19524225 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr14:31736816-31737152 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr14:34763566-34763902 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr14:38238259-38237923 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr14:40483625-40483289 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-332 |
| Cow position: | chr14:2289090-2289422 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 117, 161 |
| Conread position: | 1-334 |
| Cow position: | chr14:23254501-23254170 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 114, 237 |
| Conread position: | 1-378 |
| Cow position: | chr14:50142186-50141802 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 81 |
| Conread position: | 2-297 |
| Cow position: | chr14:13619605-13619305 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 155 |
| Conread position: | 2-300 |
| Cow position: | chr14:2297933-2298229 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 262, 47 |
| Conread position: | 4-297 |
| Cow position: | chr14:8102833-8102540 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 82 |
| Conread position: | 4-300 |
| Cow position: | chr14:34354390-34354690 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 5-307 |
| Cow position: | chr14:12903175-12903486 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 178 |
| Conread position: | 5-332 |
| Cow position: | chr14:11462239-11461909 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 286 |
| Conread position: | 5-341 |
| Cow position: | chr14:34370374-34370722 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 162 |
| Conread position: | 11-180 |
| Cow position: | chr14:13683413-13683585 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-218 |
| Cow position: | chr14:35016206-35016416 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-232 |
| Cow position: | chr14:13560010-13560229 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 64, 132 |
| Conread position: | 11-304 |
| Cow position: | chr14:11564382-11564680 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 72, 282 |
| Conread position: | 11-330 |
| Cow position: | chr14:8924943-8925269 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-330 |
| Cow position: | chr14:13104788-13105114 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-330 |
| Cow position: | chr14:31289706-31290031 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 13-307 |
| Cow position: | chr14:23180039-23179754 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 90, 167 |
| Conread position: | 15-205 |
| Cow position: | chr14:33679968-33680161 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 11, 178 |
| Conread position: | 23-263 |
| Cow position: | chr14:47603035-47603268 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 80, 118 |
| Conread position: | 24-268 |
| Cow position: | chr14:9876422-9876178 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 91, 130 |
| Conread position: | 24-315 |
| Cow position: | chr14:33713854-33714132 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 225 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 94, 44 |
| Conread position: | 25-330 |
| Cow position: | chr14:26129321-26129007 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 50, 44 |
Show alignments to all cow chromosomes.