Cow genome map

Conread name: mE4-MI-P-E4-ahd-g-01-1-UM.s1

Conread position: 1-168
Cow position: chr15:6762255-6762085 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 68

Conread position: 1-179
Cow position: chr15:18229906-18230087 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 1-226
Cow position: chr15:26077575-26077793 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 121, 68

Conread position: 1-228
Cow position: chr15:47341330-47341560 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 158
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 117, 144

Conread position: 1-263
Cow position: chr15:2664229-2664492 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 104, 120

Conread position: 1-266
Cow position: chr15:21940182-21939914 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-266
Cow position: chr15:31270030-31269765 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 104, 73

Conread position: 1-267
Cow position: chr15:21644980-21644717 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 104, 120

Conread position: 1-268
Cow position: chr15:25553983-25554250 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 153

Conread position: 1-281
Cow position: chr15:2560260-2560546 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-282
Cow position: chr15:42597411-42597124 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 74, 68

Conread position: 1-288
Cow position: chr15:4829177-4829468 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 142

Conread position: 1-290
Cow position: chr15:29467-29172 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-290
Cow position: chr15:18264921-18264625 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 117, 0

Conread position: 1-294
Cow position: chr15:481425-481720 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 77, 68

Conread position: 1-299
Cow position: chr15:21607615-21607919 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 68

Conread position: 1-301
Cow position: chr15:4214010-4214306 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 267, 104

Conread position: 1-302
Cow position: chr15:19734958-19734652 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 290

Conread position: 1-304
Cow position: chr15:2533572-2533881 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 73, 68

Conread position: 1-304
Cow position: chr15:6563734-6564042 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr15:7586940-7586637 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 214
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 117, 68

Conread position: 1-304
Cow position: chr15:21152980-21152671 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr15:22539996-22539689 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 24

Conread position: 1-304
Cow position: chr15:25069653-25069344 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 104, 120

Conread position: 1-304
Cow position: chr15:25463683-25463378 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr15:33718098-33718392 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 266, 79

Conread position: 1-304
Cow position: chr15:35404816-35405122 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 85

Conread position: 1-304
Cow position: chr15:36622821-36622521 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 25, 17

Conread position: 1-304
Cow position: chr15:45944855-45944545 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr15:52867477-52867779 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 45, 37

Conread position: 1-305
Cow position: chr15:3892427-3892734 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 117, 152

Conread position: 1-305
Cow position: chr15:17237032-17236733 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 82, 9

Conread position: 1-305
Cow position: chr15:36940541-36940233 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 206
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 109, 289

Conread position: 1-305
Cow position: chr15:40344407-40344100 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 152

Conread position: 1-305
Cow position: chr15:42939752-42940061 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 223

Conread position: 1-307
Cow position: chr15:2080172-2080487 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 252

Conread position: 1-307
Cow position: chr15:35643610-35643308 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 25, 17

Conread position: 1-308
Cow position: chr15:21533296-21532979 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 0

Conread position: 1-312
Cow position: chr15:4140068-4139750 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 222
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 0

Conread position: 1-312
Cow position: chr15:23774144-23774452 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 85

Conread position: 1-315
Cow position: chr15:13076361-13076681 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 1-316
Cow position: chr15:793897-794214 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 182

Conread position: 1-316
Cow position: chr15:39091357-39091046 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 218, 118

Conread position: 1-317
Cow position: chr15:4388588-4388914 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-317
Cow position: chr15:27747679-27747351 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 1-317
Cow position: chr15:35750455-35750130 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 104, 152

Conread position: 1-317
Cow position: chr15:42532891-42533213 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-317
Cow position: chr15:44073288-44073612 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-317
Cow position: chr15:48556560-48556886 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 110, 0

Conread position: 1-320
Cow position: chr15:36356228-36355902 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 1-325
Cow position: chr15:13546211-13545899 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 25, 17

Conread position: 1-328
Cow position: chr15:17074522-17074187 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 117, 0

Conread position: 1-328
Cow position: chr15:25165263-25164929 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 226
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 117, 0

Conread position: 1-328
Cow position: chr15:36329619-36329285 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-328
Cow position: chr15:36671017-36671336 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 17

Conread position: 1-330
Cow position: chr15:677902-678238 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr15:3007997-3007662 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 72

Conread position: 1-330
Cow position: chr15:36423772-36423439 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 85

Conread position: 1-332
Cow position: chr15:2899417-2899083 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 290

Conread position: 1-334
Cow position: chr15:37382748-37382410 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 1-343
Cow position: chr15:2436345-2436681 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 234
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 113, 93

Conread position: 2-226
Cow position: chr15:38937610-38937835 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 109, 152

Conread position: 2-231
Cow position: chr15:15262851-15262625 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 154
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 54, 39

Conread position: 2-297
Cow position: chr15:7319408-7319710 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 2-297
Cow position: chr15:21825707-21826011 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 113, 0

Conread position: 2-304
Cow position: chr15:6589091-6588785 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 116, 88

Conread position: 2-308
Cow position: chr15:312959-312642 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 14, 18

Conread position: 2-308
Cow position: chr15:5197797-5198113 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 2-319
Cow position: chr15:4712749-4713076 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 3-314
Cow position: chr15:50344887-50344576 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 15

Conread position: 4-179
Cow position: chr15:2898153-2897979 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 71, 65

Conread position: 4-230
Cow position: chr15:3792931-3793159 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 114, 90

Conread position: 4-267
Cow position: chr15:37770220-37769955 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 110, 82

Conread position: 4-308
Cow position: chr15:4728008-4728308 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 221
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 119, 180

Conread position: 4-330
Cow position: chr15:6758633-6758300 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 65

Conread position: 4-330
Cow position: chr15:16784170-16784497 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 71, 65

Conread position: 5-290
Cow position: chr15:19191414-19191701 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 179, 81

Conread position: 6-282
Cow position: chr15:1785612-1785894 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 6-329
Cow position: chr15:442942-442608 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 112, 78

Conread position: 11-163
Cow position: chr15:39419319-39419476 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 11-180
Cow position: chr15:49242465-49242292 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 64, 58

Conread position: 11-251
Cow position: chr15:24090679-24090922 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 143
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 58

Conread position: 11-290
Cow position: chr15:24097452-24097731 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 256, 89

Conread position: 11-304
Cow position: chr15:7985576-7985277 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 64, 58

Conread position: 11-304
Cow position: chr15:23666643-23666344 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-304
Cow position: chr15:50142110-50142409 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-319
Cow position: chr15:16801125-16801439 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-330
Cow position: chr15:7267452-7267778 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 58

Conread position: 23-334
Cow position: chr15:41359865-41360182 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 88, 46

Conread position: 25-305
Cow position: chr15:7574666-7574958 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 93, 230

Conread position: 25-332
Cow position: chr15:7565868-7566175 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 213
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 93, 262

Show alignments to all cow chromosomes.