Cow genome map

Conread name: mE4-MI-P-E4-ahd-g-01-1-UM.s1

Conread position: 1-170
Cow position: chr16:37146470-37146638 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 74, 68

Conread position: 1-178
Cow position: chr16:46365309-46365129 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 74, 68

Conread position: 1-180
Cow position: chr16:17111811-17111993 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 73, 68

Conread position: 1-219
Cow position: chr16:6706222-6706001 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 74, 68

Conread position: 1-242
Cow position: chr16:15349654-15349417 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 59, 0

Conread position: 1-248
Cow position: chr16:31586207-31585959 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 117, 142

Conread position: 1-268
Cow position: chr16:12244548-12244282 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-268
Cow position: chr16:29093614-29093884 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 186

Conread position: 1-279
Cow position: chr16:16681102-16680821 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-281
Cow position: chr16:23711794-23711508 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-283
Cow position: chr16:55867821-55868102 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 101, 181

Conread position: 1-295
Cow position: chr16:20377946-20378240 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 59

Conread position: 1-297
Cow position: chr16:13722096-13721794 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 0

Conread position: 1-297
Cow position: chr16:46554915-46555219 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 117, 0

Conread position: 1-300
Cow position: chr16:12535455-12535159 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 206
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 274, 116

Conread position: 1-304
Cow position: chr16:14039918-14040227 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-304
Cow position: chr16:14100345-14100650 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 214
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 117, 246

Conread position: 1-304
Cow position: chr16:18212702-18212393 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr16:18651089-18650782 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 62, 80

Conread position: 1-304
Cow position: chr16:18975361-18975670 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-304
Cow position: chr16:19081545-19081848 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 209
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 104, 120

Conread position: 1-304
Cow position: chr16:22799211-22798902 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-304
Cow position: chr16:24209905-24209596 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 216
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 117, 0

Conread position: 1-304
Cow position: chr16:25075086-25075395 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr16:42210989-42211298 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 103, 0

Conread position: 1-304
Cow position: chr16:49780457-49780148 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-305
Cow position: chr16:417388-417697 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 289

Conread position: 1-305
Cow position: chr16:3148543-3148237 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 117, 68

Conread position: 1-305
Cow position: chr16:8813610-8813303 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 121, 83

Conread position: 1-305
Cow position: chr16:23249462-23249153 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 289

Conread position: 1-305
Cow position: chr16:26627245-26627554 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 104, 120

Conread position: 1-305
Cow position: chr16:27730888-27730579 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 289

Conread position: 1-305
Cow position: chr16:43562902-43562594 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 122, 288

Conread position: 1-306
Cow position: chr16:701754-702064 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 223
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 75, 68

Conread position: 1-306
Cow position: chr16:4398750-4399049 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 25, 17

Conread position: 1-307
Cow position: chr16:14662615-14662314 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 218
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 117, 179

Conread position: 1-307
Cow position: chr16:47772753-47773072 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-308
Cow position: chr16:2408401-2408083 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 248

Conread position: 1-308
Cow position: chr16:5435318-5435635 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 68

Conread position: 1-308
Cow position: chr16:10440732-10441048 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 179

Conread position: 1-308
Cow position: chr16:15979885-15979568 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-308
Cow position: chr16:16539902-16540207 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 117, 184

Conread position: 1-308
Cow position: chr16:23985806-23986123 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 1-308
Cow position: chr16:37446205-37445894 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 117, 54

Conread position: 1-308
Cow position: chr16:49516291-49515971 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 55

Conread position: 1-311
Cow position: chr16:28193807-28193492 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 117, 169

Conread position: 1-311
Cow position: chr16:41515625-41515946 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 68

Conread position: 1-312
Cow position: chr16:4721977-4722289 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 118, 59

Conread position: 1-313
Cow position: chr16:7303249-7303567 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 120

Conread position: 1-314
Cow position: chr16:53612296-53612611 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 1-315
Cow position: chr16:54179871-54179553 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 215
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 81, 86

Conread position: 1-316
Cow position: chr16:18745537-18745224 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 15

Conread position: 1-317
Cow position: chr16:1734231-1734558 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-317
Cow position: chr16:3769518-3769189 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 1-317
Cow position: chr16:5488364-5488690 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 50, 38

Conread position: 1-317
Cow position: chr16:7467105-7467427 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-317
Cow position: chr16:28206618-28206292 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-317
Cow position: chr16:43894769-43894442 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 19

Conread position: 1-318
Cow position: chr16:1563895-1563568 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 1-320
Cow position: chr16:7457489-7457169 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 1-325
Cow position: chr16:28468630-28468295 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-330
Cow position: chr16:7385258-7385594 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr16:12736773-12737110 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 1-330
Cow position: chr16:16150255-16149919 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 231
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 117, 0

Conread position: 1-330
Cow position: chr16:20278333-20278669 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr16:24407403-24407741 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 235
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 104, 120

Conread position: 1-330
Cow position: chr16:24615572-24615246 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 222
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr16:40879085-40879421 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr16:45533955-45534286 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 27

Conread position: 1-334
Cow position: chr16:13422429-13422093 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 234
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 69, 79

Conread position: 1-334
Cow position: chr16:24637021-24636688 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 120

Conread position: 1-334
Cow position: chr16:42074406-42074064 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 1-334
Cow position: chr16:45465424-45465087 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 235
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 104, 120

Conread position: 1-334
Cow position: chr16:47403875-47404213 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 104, 59

Conread position: 1-334
Cow position: chr16:50712946-50712610 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 2-304
Cow position: chr16:4973031-4972725 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 16

Conread position: 3-334
Cow position: chr16:23810016-23810345 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 223
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 120, 140

Conread position: 4-304
Cow position: chr16:5665597-5665903 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 65

Conread position: 4-314
Cow position: chr16:41030-41345 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 129, 287

Conread position: 5-197
Cow position: chr16:26388668-26388476 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 113, 65

Conread position: 5-297
Cow position: chr16:25893005-25893301 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 106, 286

Conread position: 5-297
Cow position: chr16:25955087-25954796 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 124, 169

Conread position: 5-304
Cow position: chr16:7155101-7155402 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 21, 13

Conread position: 5-304
Cow position: chr16:27593325-27593022 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 116

Conread position: 6-307
Cow position: chr16:45755122-45754825 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 54

Conread position: 6-308
Cow position: chr16:25935244-25935553 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 7, 14

Conread position: 8-312
Cow position: chr16:6265969-6265667 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 204
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 114, 63

Conread position: 11-251
Cow position: chr16:48371600-48371357 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 11-277
Cow position: chr16:42711410-42711149 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 103, 127

Conread position: 11-304
Cow position: chr16:6677224-6677523 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 64, 58

Conread position: 11-304
Cow position: chr16:24988001-24987702 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 110

Conread position: 11-304
Cow position: chr16:25879819-25880118 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-330
Cow position: chr16:12485797-12485471 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 58

Conread position: 11-333
Cow position: chr16:45608918-45609239 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 97

Conread position: 12-290
Cow position: chr16:39615729-39616010 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 74

Conread position: 12-304
Cow position: chr16:2960183-2960481 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 57

Conread position: 12-312
Cow position: chr16:236987-237286 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 47

Conread position: 19-232
Cow position: chr16:14569687-14569472 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 7, 163

Conread position: 25-267
Cow position: chr16:26975684-26975441 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 97, 178

Conread position: 25-290
Cow position: chr16:5525582-5525311 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 44

Conread position: 25-308
Cow position: chr16:41033816-41034110 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 93, 0

Conread position: 25-320
Cow position: chr16:29539290-29538992 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 94

Conread position: 29-296
Cow position: chr16:47367507-47367780 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Show alignments to all cow chromosomes.