Cow genome map
| Conread name: | mE4-MI-P-E4-ahd-g-01-1-UM.s1 |
| Conread position: | 1-196 |
| Cow position: | chr18:50835109-50834911 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-216 |
| Cow position: | chr18:37583181-37582964 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-261 |
| Cow position: | chr18:43472874-43473136 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 117, 144 |
| Conread position: | 1-268 |
| Cow position: | chr18:22791146-22790865 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 117, 20 |
| Conread position: | 1-281 |
| Cow position: | chr18:44404107-44404396 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 82, 9 |
| Conread position: | 1-282 |
| Cow position: | chr18:16463370-16463087 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 117, 246 |
| Conread position: | 1-296 |
| Cow position: | chr18:21175086-21175386 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 114, 85 |
| Conread position: | 1-296 |
| Cow position: | chr18:30232282-30231990 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 111, 198 |
| Conread position: | 1-297 |
| Cow position: | chr18:17323656-17323955 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 144 |
| Conread position: | 1-297 |
| Cow position: | chr18:30876989-30876694 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 1-298 |
| Cow position: | chr18:23701522-23701226 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 118 |
| Conread position: | 1-302 |
| Cow position: | chr18:17335464-17335159 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-302 |
| Cow position: | chr18:36771256-36770961 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 103, 160 |
| Conread position: | 1-303 |
| Cow position: | chr18:11869763-11870071 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-303 |
| Cow position: | chr18:55554527-55554835 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-304 |
| Cow position: | chr18:603188-602879 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr18:10292007-10292316 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-304 |
| Cow position: | chr18:19355789-19356092 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 117, 237 |
| Conread position: | 1-304 |
| Cow position: | chr18:19461556-19461865 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-304 |
| Cow position: | chr18:24037570-24037261 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr18:27990033-27990342 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-304 |
| Cow position: | chr18:28969013-28968704 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 179 |
| Conread position: | 1-304 |
| Cow position: | chr18:29071697-29072002 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-304 |
| Cow position: | chr18:31139028-31139334 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr18:32164655-32164346 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-304 |
| Cow position: | chr18:44261344-44261649 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 153 |
| Conread position: | 1-304 |
| Cow position: | chr18:51459565-51459260 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr18:51690073-51690382 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr18:52629982-52629673 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 117, 162 |
| Conread position: | 1-305 |
| Cow position: | chr18:5536248-5536558 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 293 |
| Conread position: | 1-305 |
| Cow position: | chr18:24619705-24620008 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 103, 148 |
| Conread position: | 1-312 |
| Cow position: | chr18:18215737-18215420 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-312 |
| Cow position: | chr18:23802299-23802615 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 122, 290 |
| Conread position: | 1-313 |
| Cow position: | chr18:29797809-29797491 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-316 |
| Cow position: | chr18:23659618-23659298 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 57 |
| Conread position: | 1-317 |
| Cow position: | chr18:14128010-14127685 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 223 |
| Conread position: | 1-317 |
| Cow position: | chr18:36511910-36512229 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 223 |
| Conread position: | 1-328 |
| Cow position: | chr18:23688448-23688782 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-329 |
| Cow position: | chr18:26243182-26242842 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 182 |
| Conread position: | 1-330 |
| Cow position: | chr18:23716384-23716057 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 67 |
| Conread position: | 1-330 |
| Cow position: | chr18:29079013-29079349 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-330 |
| Cow position: | chr18:30606972-30607308 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr18:50093168-50092833 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-330 |
| Cow position: | chr18:51602389-51602053 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr18:54047155-54047491 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-334 |
| Cow position: | chr18:43285029-43284703 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 2-305 |
| Cow position: | chr18:37509245-37509547 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 266, 92 |
| Conread position: | 3-305 |
| Cow position: | chr18:37693009-37692700 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 188 |
| Conread position: | 4-304 |
| Cow position: | chr18:13270189-13270495 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 117 |
| Conread position: | 5-307 |
| Cow position: | chr18:21303781-21304085 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 270 |
| Conread position: | 6-169 |
| Cow position: | chr18:16390925-16390759 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 64, 68 |
| Conread position: | 6-207 |
| Cow position: | chr18:14479365-14479567 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 105, 147 |
| Conread position: | 6-308 |
| Cow position: | chr18:28928314-28928013 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 262, 113 |
| Conread position: | 11-258 |
| Cow position: | chr18:33406594-33406844 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 69, 58 |
| Conread position: | 11-290 |
| Cow position: | chr18:43129376-43129654 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 72, 108 |
| Conread position: | 11-291 |
| Cow position: | chr18:36209088-36208807 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 106, 173 |
| Conread position: | 11-304 |
| Cow position: | chr18:30844618-30844321 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 11-309 |
| Cow position: | chr18:28084333-28084637 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 25-304 |
| Cow position: | chr18:37732989-37733274 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 26-300 |
| Cow position: | chr18:42243042-42242761 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 92, 112 |
Show alignments to all cow chromosomes.