Cow genome map
| Conread name: | mE4-MI-P-E4-ahd-g-01-1-UM.s1 |
| Conread position: | 1-165 |
| Cow position: | chr21:8419412-8419573 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 114, 68 |
| Conread position: | 1-200 |
| Cow position: | chr21:19098805-19099004 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 59 |
| Conread position: | 1-213 |
| Cow position: | chr21:2664810-2664595 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 102, 122 |
| Conread position: | 1-242 |
| Cow position: | chr21:39428757-39429001 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-251 |
| Cow position: | chr21:38026973-38027227 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 114, 94 |
| Conread position: | 1-261 |
| Cow position: | chr21:27522467-27522211 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-268 |
| Cow position: | chr21:32573335-32573606 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 85 |
| Conread position: | 1-281 |
| Cow position: | chr21:38866257-38865971 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-290 |
| Cow position: | chr21:30966588-30966293 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 179 |
| Conread position: | 1-293 |
| Cow position: | chr21:39400590-39400888 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 172 |
| Conread position: | 1-297 |
| Cow position: | chr21:28915620-28915317 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 159 |
| Conread position: | 1-297 |
| Cow position: | chr21:44219034-44219336 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 1-298 |
| Cow position: | chr21:34657349-34657647 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 109 |
| Conread position: | 1-302 |
| Cow position: | chr21:46831211-46830904 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 291 |
| Conread position: | 1-303 |
| Cow position: | chr21:30627724-30627419 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 179 |
| Conread position: | 1-304 |
| Cow position: | chr21:2514206-2514511 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 246 |
| Conread position: | 1-304 |
| Cow position: | chr21:4812982-4812680 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 8 |
| Conread position: | 1-304 |
| Cow position: | chr21:6966117-6965808 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-304 |
| Cow position: | chr21:19627353-19627046 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 117, 245 |
| Conread position: | 1-304 |
| Cow position: | chr21:32237694-32238003 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr21:36376345-36376645 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr21:42917148-42917457 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 1-304 |
| Cow position: | chr21:46974375-46974070 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 241 |
| Conread position: | 1-305 |
| Cow position: | chr21:15546333-15546027 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 146 |
| Conread position: | 1-305 |
| Cow position: | chr21:18285161-18285469 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-305 |
| Cow position: | chr21:33965364-33965067 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 117, 168 |
| Conread position: | 1-305 |
| Cow position: | chr21:36506483-36506175 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 117, 153 |
| Conread position: | 1-307 |
| Cow position: | chr21:10570642-10570958 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-307 |
| Cow position: | chr21:22855268-22855568 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 68 |
| Conread position: | 1-307 |
| Cow position: | chr21:23802076-23801775 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 64 |
| Conread position: | 1-308 |
| Cow position: | chr21:5020501-5020810 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 234 |
| Conread position: | 1-308 |
| Cow position: | chr21:11144495-11144178 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-308 |
| Cow position: | chr21:27148197-27147880 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-308 |
| Cow position: | chr21:36534853-36534540 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-312 |
| Cow position: | chr21:11509296-11509613 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 117, 182 |
| Conread position: | 1-317 |
| Cow position: | chr21:149502-149828 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-317 |
| Cow position: | chr21:1195893-1196218 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 234 |
| Conread position: | 1-317 |
| Cow position: | chr21:33256911-33257237 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-317 |
| Cow position: | chr21:33317011-33316685 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-317 |
| Cow position: | chr21:43404082-43403757 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 1-319 |
| Cow position: | chr21:49655828-49655503 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-322 |
| Cow position: | chr21:34684404-34684711 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 267, 119 |
| Conread position: | 1-330 |
| Cow position: | chr21:78676-78343 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 1-330 |
| Cow position: | chr21:23341006-23341342 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 1-330 |
| Cow position: | chr21:25598028-25598355 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr21:32773290-32773626 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr21:33710144-33709809 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 117, 24 |
| Conread position: | 1-330 |
| Cow position: | chr21:39470409-39470073 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-330 |
| Cow position: | chr21:41796366-41796034 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 266, 118 |
| Conread position: | 1-334 |
| Cow position: | chr21:4719465-4719129 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-336 |
| Cow position: | chr21:14533968-14534309 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-350 |
| Cow position: | chr21:9895717-9896067 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 107 |
| Conread position: | 2-329 |
| Cow position: | chr21:4733175-4732848 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 265, 67 |
| Conread position: | 3-316 |
| Cow position: | chr21:3766413-3766095 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 4-304 |
| Cow position: | chr21:19351503-19351197 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 4-329 |
| Cow position: | chr21:4898606-4898277 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 5-307 |
| Cow position: | chr21:3252982-3253305 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 264 |
| Conread position: | 5-329 |
| Cow position: | chr21:2537798-2537480 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 113, 157 |
| Conread position: | 5-336 |
| Cow position: | chr21:33832620-33832283 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 242 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 11-232 |
| Cow position: | chr21:14727052-14727273 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 107, 81 |
| Conread position: | 11-237 |
| Cow position: | chr21:11405515-11405286 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-267 |
| Cow position: | chr21:18846969-18846712 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 104, 85 |
| Conread position: | 11-304 |
| Cow position: | chr21:48273832-48273533 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-321 |
| Cow position: | chr21:2293819-2293509 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 259 |
| Conread position: | 11-330 |
| Cow position: | chr21:23329978-23329652 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 110 |
| Conread position: | 11-330 |
| Cow position: | chr21:30297844-30298170 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-330 |
| Cow position: | chr21:34823541-34823867 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 17-300 |
| Cow position: | chr21:44862220-44861935 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 18-271 |
| Cow position: | chr21:26615512-26615258 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 124 |
| Conread position: | 25-276 |
| Cow position: | chr21:25629109-25629361 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 140 |
| Conread position: | 25-282 |
| Cow position: | chr21:13735782-13735520 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 93, 158 |
| Conread position: | 25-300 |
| Cow position: | chr21:31974516-31974793 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 81, 152 |
| Conread position: | 25-307 |
| Cow position: | chr21:4586300-4586007 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 25-344 |
| Cow position: | chr21:31252366-31252690 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 129 |
| Conread position: | 26-304 |
| Cow position: | chr21:9208693-9208973 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 239, 93 |
Show alignments to all cow chromosomes.