Cow genome map
| Conread name: | mE4-MI-P-E4-ahd-g-01-1-UM.s1 |
| Conread position: | 1-189 |
| Cow position: | chr24:29131161-29130975 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 1-197 |
| Cow position: | chr24:25285027-25285225 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 1-227 |
| Cow position: | chr24:36404590-36404815 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 114, 68 |
| Conread position: | 1-228 |
| Cow position: | chr24:17998597-17998824 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 119 |
| Conread position: | 1-242 |
| Cow position: | chr24:17323962-17324203 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 117, 197 |
| Conread position: | 1-266 |
| Cow position: | chr24:6020810-6020542 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 1-268 |
| Cow position: | chr24:38813915-38814183 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 117, 17 |
| Conread position: | 1-271 |
| Cow position: | chr24:13496552-13496825 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 1-281 |
| Cow position: | chr24:7960248-7959962 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-282 |
| Cow position: | chr24:31067777-31067490 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-283 |
| Cow position: | chr24:31381667-31381943 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 1-287 |
| Cow position: | chr24:11462743-11462447 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 251 |
| Conread position: | 1-290 |
| Cow position: | chr24:42250240-42249949 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 96 |
| Conread position: | 1-297 |
| Cow position: | chr24:28336789-28336491 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 118 |
| Conread position: | 1-297 |
| Cow position: | chr24:32608579-32608883 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-297 |
| Cow position: | chr24:33937197-33937500 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 117, 176 |
| Conread position: | 1-298 |
| Cow position: | chr24:40467145-40466844 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 289 |
| Conread position: | 1-300 |
| Cow position: | chr24:35067509-35067211 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 117, 68 |
| Conread position: | 1-303 |
| Cow position: | chr24:40272115-40272419 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-304 |
| Cow position: | chr24:3793750-3794059 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-304 |
| Cow position: | chr24:11104884-11104575 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr24:17161710-17161401 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr24:19688311-19688011 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 117, 59 |
| Conread position: | 1-304 |
| Cow position: | chr24:20367634-20367940 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 117, 223 |
| Conread position: | 1-304 |
| Cow position: | chr24:31301973-31302260 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 267, 67 |
| Conread position: | 1-305 |
| Cow position: | chr24:16081219-16080908 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 117, 293 |
| Conread position: | 1-308 |
| Cow position: | chr24:38588050-38588367 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 281 |
| Conread position: | 1-314 |
| Cow position: | chr24:17764331-17764020 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 1-319 |
| Cow position: | chr24:14609597-14609285 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 48 |
| Conread position: | 1-320 |
| Cow position: | chr24:6524265-6524582 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 1-322 |
| Cow position: | chr24:15296383-15296700 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 1-328 |
| Cow position: | chr24:5929047-5929380 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 1-328 |
| Cow position: | chr24:14194581-14194247 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-330 |
| Cow position: | chr24:1841604-1841268 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr24:12696855-12696519 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-330 |
| Cow position: | chr24:22953830-22954166 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr24:36307848-36308180 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr24:38296324-38296660 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr24:40428426-40428090 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr24:40551893-40552223 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-332 |
| Cow position: | chr24:14250315-14249981 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 288 |
| Conread position: | 1-332 |
| Cow position: | chr24:36721712-36722050 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 1-333 |
| Cow position: | chr24:36036558-36036224 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 83 |
| Conread position: | 1-334 |
| Cow position: | chr24:17365705-17365380 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1-334 |
| Cow position: | chr24:25372371-25372706 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-335 |
| Cow position: | chr24:13491764-13492099 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 103, 148 |
| Conread position: | 1-336 |
| Cow position: | chr24:6442706-6443042 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 117, 246 |
| Conread position: | 2-306 |
| Cow position: | chr24:29190557-29190861 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 67 |
| Conread position: | 2-307 |
| Cow position: | chr24:32823853-32823543 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 291 |
| Conread position: | 3-308 |
| Cow position: | chr24:26388623-26388324 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 115, 176 |
| Conread position: | 4-290 |
| Cow position: | chr24:9549535-9549825 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 201 |
| Conread position: | 4-304 |
| Cow position: | chr24:7597288-7596986 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 114, 245 |
| Conread position: | 4-314 |
| Cow position: | chr24:16908574-16908884 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 113 |
| Conread position: | 6-346 |
| Cow position: | chr24:12571184-12571538 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 66 |
| Conread position: | 11-263 |
| Cow position: | chr24:25698222-25698471 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 93, 138 |
| Conread position: | 11-290 |
| Cow position: | chr24:16402101-16401832 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 61, 93 |
| Conread position: | 11-304 |
| Cow position: | chr24:11208329-11208030 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-316 |
| Cow position: | chr24:10554023-10553715 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 144, 50 |
| Conread position: | 20-297 |
| Cow position: | chr24:42944369-42944105 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 65, 74 |
| Conread position: | 23-298 |
| Cow position: | chr24:43634404-43634682 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 95, 63 |
| Conread position: | 25-328 |
| Cow position: | chr24:40519311-40519011 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 93, 197 |
Show alignments to all cow chromosomes.