Cow genome map
| Conread name: | mE4-MI-P-E4-ahd-g-01-1-UM.s1 |
| Conread position: | 1-165 |
| Cow position: | chr25:27076186-27076019 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-180 |
| Cow position: | chr25:35571784-35571966 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-216 |
| Cow position: | chr25:4372725-4372511 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-242 |
| Cow position: | chr25:35372648-35372404 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-260 |
| Cow position: | chr25:26850250-26849990 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 68 |
| Conread position: | 1-266 |
| Cow position: | chr25:26931061-26931329 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-268 |
| Cow position: | chr25:18490031-18490300 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 104, 123 |
| Conread position: | 1-274 |
| Cow position: | chr25:20633726-20634000 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 149 |
| Conread position: | 1-279 |
| Cow position: | chr25:23999218-23998941 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 82 |
| Conread position: | 1-282 |
| Cow position: | chr25:32577697-32577410 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-283 |
| Cow position: | chr25:12082381-12082098 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-290 |
| Cow position: | chr25:9646923-9647214 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 82, 90 |
| Conread position: | 1-290 |
| Cow position: | chr25:10013096-10012802 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 59 |
| Conread position: | 1-297 |
| Cow position: | chr25:33262590-33262896 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1-298 |
| Cow position: | chr25:6955033-6955333 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-300 |
| Cow position: | chr25:13786939-13787244 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-302 |
| Cow position: | chr25:26353819-26353513 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 117, 182 |
| Conread position: | 1-304 |
| Cow position: | chr25:7223467-7223158 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr25:19337360-19337053 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr25:31073631-31073322 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr25:32610455-32610146 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr25:35589043-35589351 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr25:36350705-36351012 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 117, 59 |
| Conread position: | 1-305 |
| Cow position: | chr25:24303300-24302993 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 85 |
| Conread position: | 1-305 |
| Cow position: | chr25:29358047-29357737 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1-305 |
| Cow position: | chr25:35755278-35754971 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 153 |
| Conread position: | 1-308 |
| Cow position: | chr25:13960032-13960341 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 117, 164 |
| Conread position: | 1-308 |
| Cow position: | chr25:18886516-18886202 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 234 |
| Conread position: | 1-308 |
| Cow position: | chr25:24655204-24654892 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 68 |
| Conread position: | 1-312 |
| Cow position: | chr25:41098226-41097916 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 120 |
| Conread position: | 1-313 |
| Cow position: | chr25:27019272-27018955 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 97, 59 |
| Conread position: | 1-314 |
| Cow position: | chr25:19367730-19367416 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 82, 93 |
| Conread position: | 1-316 |
| Cow position: | chr25:18265162-18265473 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 52 |
| Conread position: | 1-316 |
| Cow position: | chr25:39386864-39386541 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 304 |
| Conread position: | 1-317 |
| Cow position: | chr25:22151070-22151396 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 182 |
| Conread position: | 1-317 |
| Cow position: | chr25:26281990-26282315 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 133 |
| Conread position: | 1-317 |
| Cow position: | chr25:27231324-27231641 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 117, 234 |
| Conread position: | 1-321 |
| Cow position: | chr25:2515973-2516288 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-328 |
| Cow position: | chr25:25826413-25826750 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-330 |
| Cow position: | chr25:11124731-11125067 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr25:14756444-14756114 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 68 |
| Conread position: | 1-330 |
| Cow position: | chr25:19139607-19139271 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr25:26705917-26705581 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 2-282 |
| Cow position: | chr25:17657586-17657871 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 2-306 |
| Cow position: | chr25:13941772-13941460 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 75, 69 |
| Conread position: | 3-330 |
| Cow position: | chr25:20075447-20075777 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 114 |
| Conread position: | 5-267 |
| Cow position: | chr25:23393842-23394099 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 5-290 |
| Cow position: | chr25:7799993-7800277 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 145, 64 |
| Conread position: | 5-315 |
| Cow position: | chr25:34673616-34673298 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 5-330 |
| Cow position: | chr25:35445920-35446248 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 113 |
| Conread position: | 11-293 |
| Cow position: | chr25:12834378-12834105 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 256, 85 |
| Conread position: | 11-304 |
| Cow position: | chr25:18330801-18330501 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 94, 110 |
| Conread position: | 11-330 |
| Cow position: | chr25:17904615-17904941 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-330 |
| Cow position: | chr25:29525892-29525566 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 18-304 |
| Cow position: | chr25:23773268-23772986 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 101, 176 |
| Conread position: | 23-278 |
| Cow position: | chr25:18452289-18452542 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 88, 140 |
Show alignments to all cow chromosomes.