Cow genome map
| Conread name: | mE4-MI-P-E4-ahd-g-01-1-UM.s1 |
| Conread position: | 1-242 |
| Cow position: | chr29:27976812-27976568 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-248 |
| Cow position: | chr29:16101925-16101675 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-266 |
| Cow position: | chr29:1478644-1478912 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-266 |
| Cow position: | chr29:22746093-22746361 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-266 |
| Cow position: | chr29:40954702-40954433 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 117, 204 |
| Conread position: | 1-268 |
| Cow position: | chr29:24951663-24951932 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 182 |
| Conread position: | 1-276 |
| Cow position: | chr29:16036224-16035948 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-281 |
| Cow position: | chr29:16052162-16051882 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 109, 51 |
| Conread position: | 1-281 |
| Cow position: | chr29:16097005-16097291 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-281 |
| Cow position: | chr29:24806648-24806934 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-282 |
| Cow position: | chr29:4163881-4164168 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-290 |
| Cow position: | chr29:15941834-15941538 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 87 |
| Conread position: | 1-295 |
| Cow position: | chr29:24577846-24578147 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 93 |
| Conread position: | 1-300 |
| Cow position: | chr29:35956109-35955815 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-304 |
| Cow position: | chr29:7847585-7847894 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-304 |
| Cow position: | chr29:10452623-10452314 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-304 |
| Cow position: | chr29:13128602-13128899 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 267, 104 |
| Conread position: | 1-304 |
| Cow position: | chr29:13585408-13585706 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 117, 149 |
| Conread position: | 1-304 |
| Cow position: | chr29:15072288-15071979 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-304 |
| Cow position: | chr29:27702270-27702579 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-304 |
| Cow position: | chr29:28657175-28656866 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-304 |
| Cow position: | chr29:32352790-32353097 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 117, 59 |
| Conread position: | 1-305 |
| Cow position: | chr29:19657074-19657383 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 117, 289 |
| Conread position: | 1-305 |
| Cow position: | chr29:32962508-32962809 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 1-305 |
| Cow position: | chr29:42255785-42255477 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-307 |
| Cow position: | chr29:40116497-40116816 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 1-313 |
| Cow position: | chr29:21167466-21167778 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 104, 59 |
| Conread position: | 1-316 |
| Cow position: | chr29:2103040-2103360 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 118 |
| Conread position: | 1-317 |
| Cow position: | chr29:7812004-7811677 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 1-317 |
| Cow position: | chr29:10820522-10820196 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-317 |
| Cow position: | chr29:32543331-32543656 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 122, 202 |
| Conread position: | 1-317 |
| Cow position: | chr29:34794670-34794340 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-317 |
| Cow position: | chr29:38229200-38229522 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 289 |
| Conread position: | 1-317 |
| Cow position: | chr29:39076526-39076200 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-319 |
| Cow position: | chr29:649245-649546 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 59 |
| Conread position: | 1-320 |
| Cow position: | chr29:45626533-45626845 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 105 |
| Conread position: | 1-326 |
| Cow position: | chr29:32556551-32556215 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-328 |
| Cow position: | chr29:31184569-31184903 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-330 |
| Cow position: | chr29:1687941-1688271 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr29:3329785-3330121 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-330 |
| Cow position: | chr29:6262816-6262481 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-330 |
| Cow position: | chr29:7427949-7427609 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-330 |
| Cow position: | chr29:9079604-9079275 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 117, 271 |
| Conread position: | 1-330 |
| Cow position: | chr29:11119519-11119183 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 1-330 |
| Cow position: | chr29:13624181-13623845 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr29:18010768-18011104 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr29:24983374-24983042 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr29:35265110-35265446 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-330 |
| Cow position: | chr29:40294500-40294836 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-332 |
| Cow position: | chr29:45462426-45462758 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 117, 182 |
| Conread position: | 1-335 |
| Cow position: | chr29:34850950-34851288 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 25, 69 |
| Conread position: | 2-297 |
| Cow position: | chr29:32806263-32806557 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 113, 142 |
| Conread position: | 2-305 |
| Cow position: | chr29:43326708-43327017 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 2-317 |
| Cow position: | chr29:35002480-35002155 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 4-179 |
| Cow position: | chr29:5787296-5787118 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 4-304 |
| Cow position: | chr29:16064906-16065212 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 4-307 |
| Cow position: | chr29:32515524-32515837 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 4-329 |
| Cow position: | chr29:19524943-19524606 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 101, 117 |
| Conread position: | 4-330 |
| Cow position: | chr29:5785690-5786023 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 5-297 |
| Cow position: | chr29:12797779-12798079 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 89 |
| Conread position: | 11-304 |
| Cow position: | chr29:21429657-21429362 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 11-305 |
| Cow position: | chr29:40156947-40157246 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 23-294 |
| Cow position: | chr29:2299104-2298829 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 25-307 |
| Cow position: | chr29:108601-108887 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 136 |
| Conread position: | 25-330 |
| Cow position: | chr29:10032437-10032125 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 80, 96 |
Show alignments to all cow chromosomes.