Cow genome map

Conread name: mE4-MI-P-E4-ahe-h-07-1-UM.s1

Conread position: 17-314
Cow position: chrX:40517350-40517058 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 199
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 213, 34

Conread position: 17-556
Cow position: chrX:11501020-11500481 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 343
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 215, 185

Conread position: 19-429
Cow position: chrX:31981860-31982273 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 274
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 21, 181

Conread position: 39-360
Cow position: chrX:966235-965916 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 207
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 117

Conread position: 39-364
Cow position: chrX:221266-220941 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 217
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 111

Conread position: 39-378
Cow position: chrX:11509813-11509476 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 227
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 20, 116

Conread position: 39-406
Cow position: chrX:2276547-2276901 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 239
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 129

Conread position: 39-414
Cow position: chrX:9154101-9153731 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 234
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 94

Conread position: 39-431
Cow position: chrX:33003997-33003603 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 262
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 141

Conread position: 39-437
Cow position: chrX:39383338-39383734 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 251
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 227, 167

Conread position: 39-478
Cow position: chrX:13404604-13405046 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 276
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 40, 169

Conread position: 39-482
Cow position: chrX:35833151-35832720 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 279
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 158

Conread position: 39-497
Cow position: chrX:41879190-41879644 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 306
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 186, 94

Conread position: 39-538
Cow position: chrX:13601497-13601991 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 318
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 155

Conread position: 39-538
Cow position: chrX:23831705-23832186 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 338
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 20, 106

Conread position: 39-538
Cow position: chrX:24006081-24006584 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 325
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 22, 169

Conread position: 39-554
Cow position: chrX:8530281-8529767 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 337
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 21, 83

Conread position: 39-557
Cow position: chrX:2790981-2790463 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 332
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 163

Conread position: 40-446
Cow position: chrX:33172218-33172625 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 265
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 167

Conread position: 40-531
Cow position: chrX:21191618-21191119 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 314
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 22, 168

Conread position: 41-535
Cow position: chrX:39559913-39560406 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 92

Conread position: 43-279
Cow position: chrX:18799544-18799779 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 156
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 165

Conread position: 45-462
Cow position: chrX:23382436-23382864 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 108

Conread position: 58-453
Cow position: chrX:10457423-10457030 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 250
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 90, 99

Conread position: 58-479
Cow position: chrX:1048623-1048197 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 291
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 67, 13

Conread position: 58-552
Cow position: chrX:21031651-21031144 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 327
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 142, 206

Conread position: 67-517
Cow position: chrX:30151881-30152332 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 299
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 163, 87

Conread position: 67-535
Cow position: chrX:20869528-20869981 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 309
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 14

Conread position: 83-364
Cow position: chrX:18597454-18597729 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 187
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 183, 135

Conread position: 83-390
Cow position: chrX:7393973-7394273 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 117, 125

Conread position: 86-538
Cow position: chrX:32002725-32003176 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 295
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 144, 116

Conread position: 88-351
Cow position: chrX:27384944-27385205 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 167
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 191, 0

Conread position: 88-534
Cow position: chrX:18769592-18769166 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 296
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 76, 83

Conread position: 99-552
Cow position: chrX:25144760-25144329 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 314
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 95

Conread position: 116-540
Cow position: chrX:17901842-17902249 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 286
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 209, 65

Conread position: 143-535
Cow position: chrX:8641429-8641036 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 7

Conread position: 157-538
Cow position: chrX:46929442-46929813 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 257
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 76, 45

Show alignments to all cow chromosomes.