Cow genome map
| Conread name: | mE4-MI-P-E4-aik-h-12-1-UM.s1 |
| Conread position: | 1-163 |
| Cow position: | chr19:20635586-20635423 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 99 |
| Conread position: | 4-169 |
| Cow position: | chr19:20678086-20678251 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-164 |
| Cow position: | chr19:20635411-20635254 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 81, 102 |
| Conread position: | 7-164 |
| Cow position: | chr19:20635663-20635506 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-168 |
| Cow position: | chr19:20678428-20678586 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 80 |
| Conread position: | 11-163 |
| Cow position: | chr19:20678177-20678329 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-179 |
| Cow position: | chr19:20678597-20678763 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 158, 111 |
| Conread position: | 16-168 |
| Cow position: | chr19:20677846-20677998 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-161 |
| Cow position: | chr19:20678351-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 87 |
| Conread position: | 18-164 |
| Cow position: | chr19:23597262-23597408 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 19-161 |
| Cow position: | chr19:20635483-20635341 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 89 |
| Conread position: | 19-161 |
| Cow position: | chr19:20678521-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-164 |
| Cow position: | chr19:20635225-20635086 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-167 |
| Cow position: | chr19:20678023-20678165 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 177-540 |
| Cow position: | chr19:23613443-23613808 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 178-433 |
| Cow position: | chr19:20678551-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 178-540 |
| Cow position: | chr19:23614704-23615068 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 117, 40 |
| Conread position: | 178-542 |
| Cow position: | chr19:23613948-23614314 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 136, 45 |
| Conread position: | 182-558 |
| Cow position: | chr19:20677799-20678177 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 42 |
| Conread position: | 184-461 |
| Cow position: | chr19:23614542-23614818 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 190, 33 |
| Conread position: | 184-540 |
| Cow position: | chr19:14940174-14940532 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 184-541 |
| Cow position: | chr19:43570206-43569847 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 184-542 |
| Cow position: | chr19:20635447-20635087 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 107, 27 |
| Conread position: | 184-542 |
| Cow position: | chr19:23597215-23597575 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 31, 41 |
| Conread position: | 184-542 |
| Cow position: | chr19:23649404-23649764 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 184-547 |
| Cow position: | chr19:14940678-14941043 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 122, 40 |
| Conread position: | 184-553 |
| Cow position: | chr19:23613870-23614241 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 259 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 184-558 |
| Cow position: | chr19:20678221-20678597 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 184-615 |
| Cow position: | chr19:20677969-20678411 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 191-559 |
| Cow position: | chr19:20677640-20678010 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 218-536 |
| Cow position: | chr19:23614407-23614728 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 82, 88 |
| Conread position: | 230-436 |
| Cow position: | chr19:14959506-14959300 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 232-459 |
| Cow position: | chr19:23613413-23613640 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 232-560 |
| Cow position: | chr19:14960410-14960080 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 82 |
| Conread position: | 233-459 |
| Cow position: | chr19:14940558-14940784 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 233-540 |
| Cow position: | chr19:20635483-20635173 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 239-465 |
| Cow position: | chr19:14960153-14959927 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 55, 75 |
| Conread position: | 239-540 |
| Cow position: | chr19:20635645-20635341 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 241-492 |
| Cow position: | chr19:14959579-14959328 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 243-540 |
| Cow position: | chr19:20677439-20677739 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 245-542 |
| Cow position: | chr19:23597191-23597491 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 56, 62 |
Show alignments to all cow chromosomes.