Cow genome map
| Conread name: | mE6-MI-P-E6-ace-g-06-1-UM.s1 |
| Conread position: | 3-218 |
| Cow position: | chr11:4270805-4270583 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 169 |
| Conread position: | 3-473 |
| Cow position: | chr11:7116269-7116757 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 410 |
| Conread position: | 3-529 |
| Cow position: | chr11:14729070-14728544 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 354 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 3-575 |
| Cow position: | chr11:46246510-46245920 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 175 |
| Conread position: | 3-635 |
| Cow position: | chr11:66727429-66728077 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 3-650 |
| Cow position: | chr11:23877359-23878010 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 3-654 |
| Cow position: | chr11:10090732-10091398 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 118 |
| Conread position: | 3-657 |
| Cow position: | chr11:21443370-21444003 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 3-660 |
| Cow position: | chr11:31874720-31874062 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 192 |
| Conread position: | 3-662 |
| Cow position: | chr11:3252773-3252132 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 413 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 3-670 |
| Cow position: | chr11:38835375-38834701 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 277 |
| Conread position: | 3-671 |
| Cow position: | chr11:10847498-10848186 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 407 |
| Conread position: | 3-671 |
| Cow position: | chr11:12358368-12357679 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-671 |
| Cow position: | chr11:41170637-41169960 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 260 |
| Conread position: | 3-672 |
| Cow position: | chr11:19102430-19101759 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 200 |
| Conread position: | 3-672 |
| Cow position: | chr11:24393375-24394049 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 229 |
| Conread position: | 3-672 |
| Cow position: | chr11:43514580-43513896 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 3-672 |
| Cow position: | chr11:44157197-44156511 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 404 |
| Conread position: | 3-672 |
| Cow position: | chr11:44251849-44252533 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 56 |
| Conread position: | 3-672 |
| Cow position: | chr11:85393755-85393078 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 404 |
| Conread position: | 3-673 |
| Cow position: | chr11:58134443-58135132 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 293 |
| Conread position: | 3-678 |
| Cow position: | chr11:9157102-9156415 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 3-679 |
| Cow position: | chr11:11988163-11988870 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 332 |
| Conread position: | 3-680 |
| Cow position: | chr11:53432010-53431314 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-681 |
| Cow position: | chr11:26124873-26124181 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 143 |
| Conread position: | 3-683 |
| Cow position: | chr11:36762812-36763498 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 145 |
| Conread position: | 3-683 |
| Cow position: | chr11:40775945-40775262 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 5-673 |
| Cow position: | chr11:12093613-12094303 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 83 |
| Conread position: | 8-600 |
| Cow position: | chr11:4027502-4026896 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 113 |
| Conread position: | 8-671 |
| Cow position: | chr11:29668555-29667872 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 90 |
| Conread position: | 10-682 |
| Cow position: | chr11:30187921-30188587 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 18-676 |
| Cow position: | chr11:71329660-71330331 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 387 |
| Conread position: | 32-683 |
| Cow position: | chr11:45922529-45921865 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 40-672 |
| Cow position: | chr11:28054520-28053878 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 366 |
| Conread position: | 55-680 |
| Cow position: | chr11:50027738-50027135 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 10 |
| Conread position: | 61-671 |
| Cow position: | chr11:9169370-9168777 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 382 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 154, 19 |
| Conread position: | 81-681 |
| Cow position: | chr11:53681567-53682157 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 386 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 131, 181 |
| Conread position: | 82-682 |
| Cow position: | chr11:9216934-9216339 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 87 |
| Conread position: | 113-529 |
| Cow position: | chr11:67866485-67866055 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 49, 288 |
| Conread position: | 120-671 |
| Cow position: | chr11:23127712-23127160 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 357 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 89, 142 |
| Conread position: | 167-680 |
| Cow position: | chr11:27670106-27669593 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 10 |
| Conread position: | 174-671 |
| Cow position: | chr11:24336953-24336463 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 172, 31 |
| Conread position: | 202-678 |
| Cow position: | chr11:26070785-26070325 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 205-682 |
| Cow position: | chr11:47760022-47759536 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 209-680 |
| Cow position: | chr11:54485142-54484668 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 10 |
| Conread position: | 222-628 |
| Cow position: | chr11:71982243-71981837 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 173 |
| Conread position: | 278-663 |
| Cow position: | chr11:49409075-49409451 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 57, 94 |
| Conread position: | 281-674 |
| Cow position: | chr11:4034997-4034611 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 110 |
| Conread position: | 287-557 |
| Cow position: | chr11:22935429-22935694 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 188, 78 |
| Conread position: | 296-491 |
| Cow position: | chr11:10869102-10869297 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 39, 95 |
| Conread position: | 296-678 |
| Cow position: | chr11:4057122-4056734 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 304-675 |
| Cow position: | chr11:3855600-3855973 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 308-670 |
| Cow position: | chr11:45654649-45654284 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 346-623 |
| Cow position: | chr11:28391052-28391329 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 386-683 |
| Cow position: | chr11:30123400-30123097 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 51 |
| Conread position: | 389-670 |
| Cow position: | chr11:18887317-18887592 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 142, 48 |
| Conread position: | 393-563 |
| Cow position: | chr11:39803658-39803831 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 393-679 |
| Cow position: | chr11:26547964-26548254 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 44 |
| Conread position: | 394-674 |
| Cow position: | chr11:31861358-31861635 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 43 |
| Conread position: | 402-670 |
| Cow position: | chr11:29232547-29232280 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 403-683 |
| Cow position: | chr11:4063396-4063122 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 410-671 |
| Cow position: | chr11:1489671-1489410 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 422-671 |
| Cow position: | chr11:4269920-4269667 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 53, 15 |
| Conread position: | 437-671 |
| Cow position: | chr11:44582839-44582599 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 450-678 |
| Cow position: | chr11:77254218-77253987 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 453-683 |
| Cow position: | chr11:21902582-21902348 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 22, 103 |
| Conread position: | 454-672 |
| Cow position: | chr11:5353959-5353744 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 114 |
| Conread position: | 461-644 |
| Cow position: | chr11:44491712-44491526 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 105 |
| Conread position: | 462-627 |
| Cow position: | chr11:38219814-38219643 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 488-675 |
| Cow position: | chr11:7116999-7117187 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 44, 132 |
| Conread position: | 495-682 |
| Cow position: | chr11:84390101-84390290 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 525-683 |
| Cow position: | chr11:72310445-72310287 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 107, 141 |
| Conread position: | 566-680 |
| Cow position: | chr11:37357918-37358033 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.