Cow genome map
| Conread name: | mE6-MI-P-E6-ace-g-06-1-UM.s1 |
| Conread position: | 2-683 |
| Cow position: | chr13:15450992-15450314 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 3-338 |
| Cow position: | chr13:676978-677338 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-453 |
| Cow position: | chr13:30656858-30656401 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 272 |
| Conread position: | 3-478 |
| Cow position: | chr13:35757363-35757852 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-635 |
| Cow position: | chr13:23003187-23002529 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 264 |
| Conread position: | 3-660 |
| Cow position: | chr13:30238367-30239030 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 114 |
| Conread position: | 3-671 |
| Cow position: | chr13:31612187-31611503 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 324 |
| Conread position: | 3-672 |
| Cow position: | chr13:1593035-1592350 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-672 |
| Cow position: | chr13:3654199-3653515 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 169 |
| Conread position: | 3-672 |
| Cow position: | chr13:15924262-15923575 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 224 |
| Conread position: | 3-672 |
| Cow position: | chr13:32737703-32737019 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 3-673 |
| Cow position: | chr13:4483917-4484600 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 172 |
| Conread position: | 3-673 |
| Cow position: | chr13:30303398-30304089 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 408 |
| Conread position: | 3-680 |
| Cow position: | chr13:34937609-34938277 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 130 |
| Conread position: | 3-681 |
| Cow position: | chr13:32545498-32546195 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 401 |
| Conread position: | 3-681 |
| Cow position: | chr13:43982960-43982285 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 3-682 |
| Cow position: | chr13:6667998-6667318 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 283 |
| Conread position: | 3-682 |
| Cow position: | chr13:50109576-50110266 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 295 |
| Conread position: | 3-682 |
| Cow position: | chr13:57023823-57024512 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 226 |
| Conread position: | 3-682 |
| Cow position: | chr13:60466452-60467141 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 192 |
| Conread position: | 3-683 |
| Cow position: | chr13:34325442-34324742 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 285 |
| Conread position: | 4-670 |
| Cow position: | chr13:15520378-15519704 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 5-673 |
| Cow position: | chr13:20541913-20541240 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 278 |
| Conread position: | 27-681 |
| Cow position: | chr13:13900012-13900682 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 149-682 |
| Cow position: | chr13:42218640-42218098 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 160-682 |
| Cow position: | chr13:16255095-16254570 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 122 |
| Conread position: | 214-655 |
| Cow position: | chr13:34910537-34910080 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 9 |
| Conread position: | 227-671 |
| Cow position: | chr13:34029769-34030215 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 30 |
| Conread position: | 231-663 |
| Cow position: | chr13:60700299-60699863 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 114, 42 |
| Conread position: | 265-681 |
| Cow position: | chr13:25692087-25692496 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 134 |
| Conread position: | 281-682 |
| Cow position: | chr13:5625584-5625189 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 45 |
| Conread position: | 289-682 |
| Cow position: | chr13:26844463-26844835 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 186, 73 |
| Conread position: | 291-634 |
| Cow position: | chr13:41696280-41696628 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 102 |
| Conread position: | 295-681 |
| Cow position: | chr13:4941811-4942198 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 297-670 |
| Cow position: | chr13:33335886-33335511 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 99 |
| Conread position: | 299-679 |
| Cow position: | chr13:19413914-19414277 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 299-683 |
| Cow position: | chr13:6758408-6758785 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 62, 121 |
| Conread position: | 304-680 |
| Cow position: | chr13:14178403-14178026 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 39, 87 |
| Conread position: | 320-676 |
| Cow position: | chr13:34765995-34765653 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 343-671 |
| Cow position: | chr13:28670786-28670459 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 132, 50 |
| Conread position: | 359-617 |
| Cow position: | chr13:31730384-31730125 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 38, 27 |
| Conread position: | 389-572 |
| Cow position: | chr13:48358225-48358412 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 48 |
| Conread position: | 393-673 |
| Cow position: | chr13:9045299-9045574 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 396-678 |
| Cow position: | chr13:5628283-5628005 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 41 |
| Conread position: | 400-670 |
| Cow position: | chr13:15543070-15543343 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 81, 57 |
| Conread position: | 404-682 |
| Cow position: | chr13:34041801-34041522 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 33 |
| Conread position: | 426-673 |
| Cow position: | chr13:17331207-17330958 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 435-679 |
| Cow position: | chr13:11798148-11797906 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 40, 184 |
| Conread position: | 452-680 |
| Cow position: | chr13:35757852-35758086 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 453-682 |
| Cow position: | chr13:34049319-34049555 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 63 |
| Conread position: | 473-671 |
| Cow position: | chr13:30654778-30654576 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 481-681 |
| Cow position: | chr13:34154150-34153947 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 50, 188 |
| Conread position: | 539-671 |
| Cow position: | chr13:14402426-14402293 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 541-682 |
| Cow position: | chr13:43590005-43590146 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 125 |
Show alignments to all cow chromosomes.