Cow genome map

Conread name: mE6-MI-P-E6-ace-g-06-1-UM.s1

Conread position: 3-306
Cow position: chr15:35753598-35753278 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 3-378
Cow position: chr15:6623093-6623472 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 266
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 18, 117

Conread position: 3-457
Cow position: chr15:7549399-7549859 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 55

Conread position: 3-603
Cow position: chr15:328426-329031 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 233

Conread position: 3-616
Cow position: chr15:7934325-7934953 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 59

Conread position: 3-630
Cow position: chr15:7965967-7965307 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 117

Conread position: 3-660
Cow position: chr15:14582352-14581690 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 38

Conread position: 3-662
Cow position: chr15:4812601-4813271 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 148

Conread position: 3-669
Cow position: chr15:3261335-3260640 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 203

Conread position: 3-671
Cow position: chr15:19738054-19737369 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 404

Conread position: 3-672
Cow position: chr15:2076647-2077339 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 402

Conread position: 3-672
Cow position: chr15:4671429-4672116 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 285

Conread position: 3-672
Cow position: chr15:4961645-4962318 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 39

Conread position: 3-672
Cow position: chr15:24295093-24295779 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 379

Conread position: 3-673
Cow position: chr15:18576713-18577393 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 398

Conread position: 3-673
Cow position: chr15:32494388-32493705 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 403

Conread position: 3-673
Cow position: chr15:35647668-35646990 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 295

Conread position: 3-673
Cow position: chr15:44069919-44070609 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 405

Conread position: 3-674
Cow position: chr15:18267994-18267296 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 401

Conread position: 3-674
Cow position: chr15:28490148-28489464 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 196

Conread position: 3-674
Cow position: chr15:31358885-31359560 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 228

Conread position: 3-675
Cow position: chr15:6078756-6079433 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 18

Conread position: 3-675
Cow position: chr15:21665747-21665062 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 228

Conread position: 3-677
Cow position: chr15:1237684-1238365 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 125

Conread position: 3-678
Cow position: chr15:8750425-8751090 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 39

Conread position: 3-679
Cow position: chr15:10888614-10889302 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 18

Conread position: 3-679
Cow position: chr15:44828793-44829490 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 407

Conread position: 3-680
Cow position: chr15:6471925-6471238 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 399

Conread position: 3-681
Cow position: chr15:444600-445297 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 142

Conread position: 3-681
Cow position: chr15:6155954-6155252 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 410

Conread position: 3-681
Cow position: chr15:7544880-7545556 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 94

Conread position: 3-681
Cow position: chr15:8099487-8100160 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 62

Conread position: 3-682
Cow position: chr15:315861-315168 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 136

Conread position: 3-682
Cow position: chr15:524862-524168 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 387

Conread position: 3-682
Cow position: chr15:4196455-4197153 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 401

Conread position: 3-682
Cow position: chr15:4922149-4922840 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 291

Conread position: 3-682
Cow position: chr15:5980355-5981037 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 318

Conread position: 3-682
Cow position: chr15:7837243-7837942 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 211

Conread position: 3-683
Cow position: chr15:2762682-2763352 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 38

Conread position: 3-683
Cow position: chr15:3888870-3889570 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 121

Conread position: 3-683
Cow position: chr15:7234298-7234949 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 167

Conread position: 3-683
Cow position: chr15:9429940-9430625 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 399

Conread position: 3-683
Cow position: chr15:15347120-15346421 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 56

Conread position: 3-683
Cow position: chr15:36626296-36625579 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 351

Conread position: 4-682
Cow position: chr15:32720743-32720054 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 274

Conread position: 6-682
Cow position: chr15:17080206-17079509 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 199

Conread position: 8-529
Cow position: chr15:19817971-19818501 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 139

Conread position: 10-683
Cow position: chr15:20356895-20356228 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 155

Conread position: 18-683
Cow position: chr15:4651378-4652047 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 70

Conread position: 23-681
Cow position: chr15:21449719-21450360 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 53

Conread position: 29-627
Cow position: chr15:47772180-47772783 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 386
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 11, 49

Conread position: 37-680
Cow position: chr15:32693609-32694254 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 141

Conread position: 45-670
Cow position: chr15:53137178-53136541 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 357

Conread position: 79-674
Cow position: chr15:8057376-8057970 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 5

Conread position: 81-539
Cow position: chr15:24717175-24717634 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 42

Conread position: 86-529
Cow position: chr15:34367601-34367157 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 277
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 107, 51

Conread position: 102-673
Cow position: chr15:1782323-1782918 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 294

Conread position: 130-529
Cow position: chr15:31862425-31862027 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 148

Conread position: 148-682
Cow position: chr15:6592476-6591924 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 12

Conread position: 165-681
Cow position: chr15:8811856-8811334 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 176

Conread position: 177-681
Cow position: chr15:17218084-17217568 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 98

Conread position: 181-669
Cow position: chr15:9003940-9003443 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 184

Conread position: 199-671
Cow position: chr15:9739169-9738706 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 318
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 22, 77

Conread position: 228-662
Cow position: chr15:9912920-9913365 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 167

Conread position: 263-662
Cow position: chr15:4765441-4765849 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 66

Conread position: 291-681
Cow position: chr15:2214605-2214206 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 272
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 48, 153

Conread position: 295-672
Cow position: chr15:4386058-4386441 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 101

Conread position: 295-672
Cow position: chr15:35753017-35752637 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 95

Conread position: 304-619
Cow position: chr15:1300492-1300179 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 26

Conread position: 307-562
Cow position: chr15:32516153-32515899 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 64, 81

Conread position: 311-682
Cow position: chr15:51217918-51218296 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 85

Conread position: 340-682
Cow position: chr15:36668086-36668439 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 10

Conread position: 340-683
Cow position: chr15:2016917-2017259 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 235
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 16

Conread position: 395-668
Cow position: chr15:2925708-2925987 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 50, 42

Conread position: 395-683
Cow position: chr15:17293478-17293754 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 208
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 80, 42

Conread position: 396-659
Cow position: chr15:53313169-53313431 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 14

Conread position: 402-644
Cow position: chr15:51715339-51715580 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 72, 19

Conread position: 402-678
Cow position: chr15:51675128-51675405 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 73, 19

Conread position: 404-680
Cow position: chr15:32204024-32204300 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 192
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 31

Conread position: 414-635
Cow position: chr15:6485007-6485232 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 29

Conread position: 421-682
Cow position: chr15:2902046-2901785 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 192
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 54, 18

Conread position: 437-682
Cow position: chr15:6623659-6623903 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 169
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 94

Conread position: 454-680
Cow position: chr15:13391610-13391377 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 21, 123

Conread position: 459-657
Cow position: chr15:21948784-21948580 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 475-681
Cow position: chr15:43619700-43619907 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 484-681
Cow position: chr15:35736279-35736479 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 183

Conread position: 496-680
Cow position: chr15:1764829-1765007 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 27, 0

Conread position: 513-683
Cow position: chr15:38981244-38981417 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 154

Conread position: 530-683
Cow position: chr15:6386803-6386650 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 91, 29

Show alignments to all cow chromosomes.