Cow genome map
| Conread name: | mE6-MI-P-E6-ace-g-06-1-UM.s1 |
| Conread position: | 2-672 |
| Cow position: | chr16:26663402-26664088 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 404 |
| Conread position: | 3-520 |
| Cow position: | chr16:836697-837233 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 229 |
| Conread position: | 3-577 |
| Cow position: | chr16:10203787-10203209 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 169 |
| Conread position: | 3-670 |
| Cow position: | chr16:25457813-25457126 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 407 |
| Conread position: | 3-672 |
| Cow position: | chr16:2411316-2410628 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 392 |
| Conread position: | 3-672 |
| Cow position: | chr16:10437893-10438590 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 163 |
| Conread position: | 3-672 |
| Cow position: | chr16:12538274-12537589 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-672 |
| Cow position: | chr16:23982962-23983635 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 3-672 |
| Cow position: | chr16:45798226-45798898 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 3-673 |
| Cow position: | chr16:8816454-8815767 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-673 |
| Cow position: | chr16:25441276-25441968 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 408 |
| Conread position: | 3-673 |
| Cow position: | chr16:43897619-43896937 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 119 |
| Conread position: | 3-674 |
| Cow position: | chr16:40296526-40295837 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-675 |
| Cow position: | chr16:14666161-14665469 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 293 |
| Conread position: | 3-675 |
| Cow position: | chr16:31592262-31591577 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 349 |
| Conread position: | 3-681 |
| Cow position: | chr16:2727636-2726941 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 327 |
| Conread position: | 3-681 |
| Cow position: | chr16:28471450-28470753 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 3-682 |
| Cow position: | chr16:407380-406691 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 403 |
| Conread position: | 3-682 |
| Cow position: | chr16:1567802-1567105 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-682 |
| Cow position: | chr16:25085293-25085961 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 3-682 |
| Cow position: | chr16:25257588-25258300 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 3-682 |
| Cow position: | chr16:25341617-25342317 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 134 |
| Conread position: | 3-683 |
| Cow position: | chr16:2483488-2482789 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 400 |
| Conread position: | 3-683 |
| Cow position: | chr16:25171003-25171700 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 266 |
| Conread position: | 5-676 |
| Cow position: | chr16:29033701-29034390 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 5-677 |
| Cow position: | chr16:29046676-29047360 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 117 |
| Conread position: | 6-663 |
| Cow position: | chr16:21809440-21810097 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 417 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 15, 68 |
| Conread position: | 27-683 |
| Cow position: | chr16:4479307-4478633 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 381 |
| Conread position: | 31-563 |
| Cow position: | chr16:23808102-23808662 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 146 |
| Conread position: | 39-683 |
| Cow position: | chr16:15476533-15477190 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 366 |
| Conread position: | 48-671 |
| Cow position: | chr16:27734074-27733461 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 68-663 |
| Cow position: | chr16:28437663-28437061 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 328 |
| Conread position: | 68-672 |
| Cow position: | chr16:1431910-1432528 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 303 |
| Conread position: | 75-683 |
| Cow position: | chr16:49256463-49255886 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 34 |
| Conread position: | 79-671 |
| Cow position: | chr16:37456290-37455682 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 50 |
| Conread position: | 80-614 |
| Cow position: | chr16:30049232-30049766 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 81 |
| Conread position: | 98-473 |
| Cow position: | chr16:43852364-43852000 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 42 |
| Conread position: | 115-672 |
| Cow position: | chr16:41562016-41562552 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 68 |
| Conread position: | 138-467 |
| Cow position: | chr16:19152086-19151743 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 85, 310 |
| Conread position: | 176-645 |
| Cow position: | chr16:41166934-41166458 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 47 |
| Conread position: | 193-683 |
| Cow position: | chr16:18498431-18497939 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 5 |
| Conread position: | 198-670 |
| Cow position: | chr16:23536033-23535555 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 200 |
| Conread position: | 271-559 |
| Cow position: | chr16:49234727-49234435 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 68, 32 |
| Conread position: | 291-681 |
| Cow position: | chr16:16271188-16270792 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 293-662 |
| Cow position: | chr16:39367426-39367048 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 295-671 |
| Cow position: | chr16:5484691-5485068 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 95 |
| Conread position: | 295-671 |
| Cow position: | chr16:15185031-15185409 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 97 |
| Conread position: | 316-671 |
| Cow position: | chr16:42736416-42736065 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 75 |
| Conread position: | 340-532 |
| Cow position: | chr16:15567039-15567230 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 135, 52 |
| Conread position: | 340-671 |
| Cow position: | chr16:7676448-7676120 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 25 |
| Conread position: | 340-671 |
| Cow position: | chr16:23252430-23252098 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 340-681 |
| Cow position: | chr16:51405931-51405604 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 192, 55 |
| Conread position: | 340-683 |
| Cow position: | chr16:15493507-15493852 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 343-654 |
| Cow position: | chr16:20201924-20202237 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 49 |
| Conread position: | 343-683 |
| Cow position: | chr16:37481120-37480789 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 48 |
| Conread position: | 378-681 |
| Cow position: | chr16:23670737-23671044 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 386-603 |
| Cow position: | chr16:49221877-49221663 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 386-616 |
| Cow position: | chr16:47473546-47473782 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 415-683 |
| Cow position: | chr16:23802035-23801767 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 437-683 |
| Cow position: | chr16:1860320-1860568 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 38, 189 |
| Conread position: | 477-672 |
| Cow position: | chr16:337307-337504 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 191 |
| Conread position: | 481-679 |
| Cow position: | chr16:10565613-10565414 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 496-682 |
| Cow position: | chr16:56916906-56916717 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 28, 173 |
| Conread position: | 499-680 |
| Cow position: | chr16:26978300-26978485 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 171 |
| Conread position: | 506-682 |
| Cow position: | chr16:26105892-26105715 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 161 |
| Conread position: | 520-673 |
| Cow position: | chr16:15567440-15567593 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 146 |
| Conread position: | 560-672 |
| Cow position: | chr16:7464053-7464165 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 106 |
Show alignments to all cow chromosomes.