Cow genome map
| Conread name: | mE6-MI-P-E6-ace-g-06-1-UM.s1 |
| Conread position: | 2-678 |
| Cow position: | chr17:18194053-18194729 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 221 |
| Conread position: | 3-162 |
| Cow position: | chr17:14051887-14051720 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-196 |
| Cow position: | chr17:19269138-19268937 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-292 |
| Cow position: | chr17:15850627-15850929 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 3-294 |
| Cow position: | chr17:11376561-11376257 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-453 |
| Cow position: | chr17:1382591-1382132 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 196 |
| Conread position: | 3-614 |
| Cow position: | chr17:6076417-6077051 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 405 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 66, 419 |
| Conread position: | 3-625 |
| Cow position: | chr17:18103456-18102829 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 224 |
| Conread position: | 3-627 |
| Cow position: | chr17:14216803-14216170 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 116 |
| Conread position: | 3-671 |
| Cow position: | chr17:6068785-6069464 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 3-671 |
| Cow position: | chr17:19019801-19020479 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 56 |
| Conread position: | 3-671 |
| Cow position: | chr17:40805047-40805718 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 3-672 |
| Cow position: | chr17:31767816-31767131 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 283 |
| Conread position: | 3-673 |
| Cow position: | chr17:16857295-16856610 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 405 |
| Conread position: | 3-674 |
| Cow position: | chr17:15324051-15324741 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-675 |
| Cow position: | chr17:20087518-20086844 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 282 |
| Conread position: | 3-676 |
| Cow position: | chr17:2579844-2580531 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 380 |
| Conread position: | 3-676 |
| Cow position: | chr17:5226846-5227533 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 166 |
| Conread position: | 3-681 |
| Cow position: | chr17:4060328-4061016 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 283 |
| Conread position: | 3-681 |
| Cow position: | chr17:11087495-11086802 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 3-681 |
| Cow position: | chr17:14894383-14895076 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-682 |
| Cow position: | chr17:1880319-1881018 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 3-682 |
| Cow position: | chr17:15143144-15142437 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 267 |
| Conread position: | 3-682 |
| Cow position: | chr17:24029770-24029084 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 107 |
| Conread position: | 3-683 |
| Cow position: | chr17:3642607-3641914 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 173 |
| Conread position: | 3-683 |
| Cow position: | chr17:6260073-6260778 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 455 |
| Conread position: | 5-681 |
| Cow position: | chr17:15436016-15436712 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 399 |
| Conread position: | 5-683 |
| Cow position: | chr17:14040801-14040118 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 27-682 |
| Cow position: | chr17:20402659-20403339 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 281 |
| Conread position: | 41-682 |
| Cow position: | chr17:43988770-43989419 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 63 |
| Conread position: | 68-638 |
| Cow position: | chr17:14911168-14910594 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 355 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 83-681 |
| Cow position: | chr17:6001134-6000542 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 82 |
| Conread position: | 108-562 |
| Cow position: | chr17:36270682-36271133 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 140-662 |
| Cow position: | chr17:2168871-2169372 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 158-679 |
| Cow position: | chr17:16899915-16899389 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 186-670 |
| Cow position: | chr17:19268417-19267921 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 216 |
| Conread position: | 209-679 |
| Cow position: | chr17:20488386-20488859 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 91 |
| Conread position: | 211-677 |
| Cow position: | chr17:20100029-20099562 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 11 |
| Conread position: | 240-683 |
| Cow position: | chr17:13705031-13705466 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 103, 123 |
| Conread position: | 242-672 |
| Cow position: | chr17:4942255-4941822 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 148 |
| Conread position: | 279-668 |
| Cow position: | chr17:1787412-1787030 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 116 |
| Conread position: | 295-671 |
| Cow position: | chr17:15851219-15851596 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 340-683 |
| Cow position: | chr17:2030697-2031050 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 47 |
| Conread position: | 344-679 |
| Cow position: | chr17:11025937-11025598 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 31, 86 |
| Conread position: | 392-682 |
| Cow position: | chr17:42265585-42265880 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 83, 45 |
| Conread position: | 402-621 |
| Cow position: | chr17:14307214-14306995 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 402-663 |
| Cow position: | chr17:38874265-38874533 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 73, 39 |
| Conread position: | 411-683 |
| Cow position: | chr17:54808-54537 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 64, 10 |
| Conread position: | 414-672 |
| Cow position: | chr17:36548-36802 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 23 |
| Conread position: | 425-671 |
| Cow position: | chr17:31532885-31533129 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 58 |
| Conread position: | 438-672 |
| Cow position: | chr17:14240169-14240408 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 37, 233 |
| Conread position: | 443-683 |
| Cow position: | chr17:151222-150976 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 32, 212 |
| Conread position: | 467-670 |
| Cow position: | chr17:8202671-8202873 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 8, 60 |
| Conread position: | 494-673 |
| Cow position: | chr17:239072-239258 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 179 |
| Conread position: | 502-683 |
| Cow position: | chr17:15371962-15372147 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.