Cow genome map
| Conread name: | mE6-MI-P-E6-ace-g-06-1-UM.s1 |
| Conread position: | 3-271 |
| Cow position: | chr21:18819652-18819366 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 169 |
| Conread position: | 3-380 |
| Cow position: | chr21:30562320-30562708 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 168 |
| Conread position: | 3-457 |
| Cow position: | chr21:6622101-6622568 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 207 |
| Conread position: | 3-468 |
| Cow position: | chr21:4094017-4094493 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 3-519 |
| Cow position: | chr21:30599410-30598880 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 390 |
| Conread position: | 3-577 |
| Cow position: | chr21:47941370-47941960 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 3-605 |
| Cow position: | chr21:48116618-48117228 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 3-619 |
| Cow position: | chr21:4077348-4077977 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 399 |
| Conread position: | 3-644 |
| Cow position: | chr21:21944222-21943594 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 3-670 |
| Cow position: | chr21:1192269-1192952 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-672 |
| Cow position: | chr21:146440-147127 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 404 |
| Conread position: | 3-672 |
| Cow position: | chr21:10567186-10567864 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 3-673 |
| Cow position: | chr21:10850594-10851277 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 213 |
| Conread position: | 3-676 |
| Cow position: | chr21:35144274-35144954 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 403 |
| Conread position: | 3-677 |
| Cow position: | chr21:4589474-4588794 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 3-682 |
| Cow position: | chr21:29595-30284 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 3-682 |
| Cow position: | chr21:2416731-2417421 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 304 |
| Conread position: | 3-682 |
| Cow position: | chr21:37371756-37372444 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 296 |
| Conread position: | 3-683 |
| Cow position: | chr21:2883231-2882530 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 408 |
| Conread position: | 3-683 |
| Cow position: | chr21:3779284-3779975 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 227 |
| Conread position: | 3-683 |
| Cow position: | chr21:21915204-21915889 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 140 |
| Conread position: | 3-683 |
| Cow position: | chr21:40271163-40270467 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 4-680 |
| Cow position: | chr21:13313284-13313961 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 210 |
| Conread position: | 4-681 |
| Cow position: | chr21:467408-468071 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 4-683 |
| Cow position: | chr21:1287706-1287007 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 5-672 |
| Cow position: | chr21:39087522-39088197 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 135 |
| Conread position: | 9-672 |
| Cow position: | chr21:2540564-2539885 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 114 |
| Conread position: | 18-337 |
| Cow position: | chr21:23812707-23813035 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 191 |
| Conread position: | 53-683 |
| Cow position: | chr21:18817982-18817343 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 68-663 |
| Cow position: | chr21:30315865-30316461 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 373 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 153, 94 |
| Conread position: | 68-683 |
| Cow position: | chr21:37148630-37149246 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 130 |
| Conread position: | 116-672 |
| Cow position: | chr21:25782273-25782833 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 41 |
| Conread position: | 144-671 |
| Cow position: | chr21:5840606-5840068 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 257 |
| Conread position: | 146-587 |
| Cow position: | chr21:5015631-5015196 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 175-619 |
| Cow position: | chr21:217743-218187 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 221 |
| Conread position: | 182-619 |
| Cow position: | chr21:445822-446258 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 215 |
| Conread position: | 220-663 |
| Cow position: | chr21:16692978-16693417 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 237-673 |
| Cow position: | chr21:20743815-20743382 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 9 |
| Conread position: | 240-671 |
| Cow position: | chr21:4184663-4185101 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 156 |
| Conread position: | 241-529 |
| Cow position: | chr21:26743418-26743136 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 234, 32 |
| Conread position: | 246-671 |
| Cow position: | chr21:37719250-37718822 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 290-627 |
| Cow position: | chr21:49295416-49295757 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 111 |
| Conread position: | 293-676 |
| Cow position: | chr21:1689346-1688960 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 44, 99 |
| Conread position: | 295-672 |
| Cow position: | chr21:26402674-26402291 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 101 |
| Conread position: | 295-676 |
| Cow position: | chr21:27070153-27069766 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 101 |
| Conread position: | 304-635 |
| Cow position: | chr21:27566470-27566799 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 91 |
| Conread position: | 304-683 |
| Cow position: | chr21:360466-360851 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 340-681 |
| Cow position: | chr21:31515462-31515121 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 46 |
| Conread position: | 392-681 |
| Cow position: | chr21:34001761-34001473 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 83, 45 |
| Conread position: | 393-675 |
| Cow position: | chr21:23297900-23297620 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 11 |
| Conread position: | 402-676 |
| Cow position: | chr21:5018038-5018311 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 407-682 |
| Cow position: | chr21:9892820-9893103 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 417-674 |
| Cow position: | chr21:21223027-21222770 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 449-661 |
| Cow position: | chr21:28613074-28613281 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 454-683 |
| Cow position: | chr21:6624746-6624979 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 464-635 |
| Cow position: | chr21:2711950-2712125 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 493-683 |
| Cow position: | chr21:48292464-48292655 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 111 |
| Conread position: | 501-683 |
| Cow position: | chr21:45782504-45782689 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 27, 168 |
| Conread position: | 502-672 |
| Cow position: | chr21:2673983-2673810 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 502-683 |
| Cow position: | chr21:26835914-26836098 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 154 |
| Conread position: | 525-672 |
| Cow position: | chr21:30598425-30598283 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 525-683 |
| Cow position: | chr21:27284502-27284661 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.