Cow genome map
| Conread name: | mE6-MI-P-E6-ace-g-06-1-UM.s1 |
| Conread position: | 3-264 |
| Cow position: | chr24:7061818-7062092 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-278 |
| Cow position: | chr24:12796784-12796511 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 109 |
| Conread position: | 3-671 |
| Cow position: | chr24:148188-147502 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 407 |
| Conread position: | 3-672 |
| Cow position: | chr24:6024679-6023997 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 3-672 |
| Cow position: | chr24:12335345-12334648 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 415 |
| Conread position: | 3-672 |
| Cow position: | chr24:17696547-17695872 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 3-672 |
| Cow position: | chr24:19833816-19834505 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 259 |
| Conread position: | 3-672 |
| Cow position: | chr24:22971517-22972201 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 404 |
| Conread position: | 3-673 |
| Cow position: | chr24:4415099-4414421 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 129 |
| Conread position: | 3-679 |
| Cow position: | chr24:13188597-13189298 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 398 |
| Conread position: | 3-681 |
| Cow position: | chr24:12205878-12205188 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 159 |
| Conread position: | 3-682 |
| Cow position: | chr24:6660071-6659377 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 417 |
| Conread position: | 3-682 |
| Cow position: | chr24:9188307-9187612 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 3-682 |
| Cow position: | chr24:23505438-23504744 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 169 |
| Conread position: | 3-682 |
| Cow position: | chr24:44017957-44018638 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 300 |
| Conread position: | 3-683 |
| Cow position: | chr24:12086630-12087325 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 137 |
| Conread position: | 3-683 |
| Cow position: | chr24:14390129-14389419 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 275 |
| Conread position: | 4-601 |
| Cow position: | chr24:29703954-29704542 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 377 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 4-683 |
| Cow position: | chr24:33933798-33934495 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 405 |
| Conread position: | 5-439 |
| Cow position: | chr24:12237665-12238115 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 395 |
| Conread position: | 9-672 |
| Cow position: | chr24:29187720-29188401 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 184 |
| Conread position: | 10-680 |
| Cow position: | chr24:38637979-38638657 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 135 |
| Conread position: | 18-681 |
| Cow position: | chr24:36559315-36558653 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 157 |
| Conread position: | 24-336 |
| Cow position: | chr24:22793622-22793946 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 60-683 |
| Cow position: | chr24:19701994-19702607 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 68-673 |
| Cow position: | chr24:9544560-9545173 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 333 |
| Conread position: | 81-683 |
| Cow position: | chr24:12143825-12143218 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 104-579 |
| Cow position: | chr24:6065181-6064707 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 21 |
| Conread position: | 111-683 |
| Cow position: | chr24:6049125-6049671 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 380 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 188-683 |
| Cow position: | chr24:36708977-36709479 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 204-678 |
| Cow position: | chr24:7090333-7089859 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 228-638 |
| Cow position: | chr24:28210421-28210000 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 111, 12 |
| Conread position: | 243-619 |
| Cow position: | chr24:40304711-40305085 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 187, 15 |
| Conread position: | 243-621 |
| Cow position: | chr24:14383912-14383536 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 120 |
| Conread position: | 264-633 |
| Cow position: | chr24:40655748-40656127 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 67, 128 |
| Conread position: | 281-683 |
| Cow position: | chr24:14871596-14871193 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 291-673 |
| Cow position: | chr24:12129342-12128956 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 100 |
| Conread position: | 294-678 |
| Cow position: | chr24:6406756-6407146 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 102 |
| Conread position: | 294-679 |
| Cow position: | chr24:9091317-9090947 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 51, 88 |
| Conread position: | 301-683 |
| Cow position: | chr24:6332962-6332573 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 304-683 |
| Cow position: | chr24:6337121-6337511 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 94 |
| Conread position: | 311-619 |
| Cow position: | chr24:40193259-40193570 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 382-669 |
| Cow position: | chr24:11866433-11866141 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 386-660 |
| Cow position: | chr24:29182970-29183250 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 386-683 |
| Cow position: | chr24:43060126-43060411 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 246, 17 |
| Conread position: | 414-657 |
| Cow position: | chr24:34494308-34494061 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 475-681 |
| Cow position: | chr24:27147621-27147829 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 56, 81 |
| Conread position: | 477-682 |
| Cow position: | chr24:6129747-6129944 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 477-683 |
| Cow position: | chr24:14754584-14754793 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 54, 190 |
| Conread position: | 488-660 |
| Cow position: | chr24:6142018-6142186 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 133, 69 |
| Conread position: | 493-673 |
| Cow position: | chr24:14278576-14278396 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 122, 36 |
| Conread position: | 525-680 |
| Cow position: | chr24:17321667-17321822 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 107, 139 |
Show alignments to all cow chromosomes.