Cow genome map
| Conread name: | mE6-MI-P-E6-ace-g-06-1-UM.s1 |
| Conread position: | 3-179 |
| Cow position: | chr29:410171-409988 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 3-293 |
| Cow position: | chr29:7844679-7844982 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-299 |
| Cow position: | chr29:23976195-23976498 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 3-333 |
| Cow position: | chr29:19622893-19622551 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 274 |
| Conread position: | 3-338 |
| Cow position: | chr29:32540165-32540506 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 227 |
| Conread position: | 3-584 |
| Cow position: | chr29:27249994-27249395 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 400 |
| Conread position: | 3-611 |
| Cow position: | chr29:2690255-2690887 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-612 |
| Cow position: | chr29:16022885-16023508 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 408 |
| Conread position: | 3-651 |
| Cow position: | chr29:34925827-34926494 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 122 |
| Conread position: | 3-654 |
| Cow position: | chr29:16174528-16173867 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 418 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 21, 142 |
| Conread position: | 3-669 |
| Cow position: | chr29:31024415-31023757 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 423 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 3-670 |
| Cow position: | chr29:7430864-7430184 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 228 |
| Conread position: | 3-671 |
| Cow position: | chr29:5982363-5981679 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 400 |
| Conread position: | 3-671 |
| Cow position: | chr29:26164468-26163797 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 225 |
| Conread position: | 3-671 |
| Cow position: | chr29:34799455-34798773 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 3-671 |
| Cow position: | chr29:38227334-38228013 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 227 |
| Conread position: | 3-672 |
| Cow position: | chr29:5957954-5958637 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 3-672 |
| Cow position: | chr29:10647896-10647213 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 228 |
| Conread position: | 3-672 |
| Cow position: | chr29:39079356-39078669 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 405 |
| Conread position: | 3-672 |
| Cow position: | chr29:45587013-45586339 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 348 |
| Conread position: | 3-673 |
| Cow position: | chr29:20251513-20252203 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-679 |
| Cow position: | chr29:9643403-9642717 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 226 |
| Conread position: | 3-680 |
| Cow position: | chr29:610264-609579 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 177 |
| Conread position: | 3-680 |
| Cow position: | chr29:25932188-25931496 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 3-682 |
| Cow position: | chr29:14085780-14085081 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 3-682 |
| Cow position: | chr29:18856595-18855904 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 118 |
| Conread position: | 3-682 |
| Cow position: | chr29:27980575-27979878 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 232 |
| Conread position: | 3-682 |
| Cow position: | chr29:40502629-40501934 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-682 |
| Cow position: | chr29:45460069-45460768 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 407 |
| Conread position: | 3-683 |
| Cow position: | chr29:2100200-2100896 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 314 |
| Conread position: | 3-683 |
| Cow position: | chr29:2841018-2840330 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 3-683 |
| Cow position: | chr29:10823614-10822936 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 119 |
| Conread position: | 3-683 |
| Cow position: | chr29:21426675-21425981 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 284 |
| Conread position: | 4-672 |
| Cow position: | chr29:14586271-14586957 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 404 |
| Conread position: | 5-683 |
| Cow position: | chr29:43322911-43323605 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 403 |
| Conread position: | 7-662 |
| Cow position: | chr29:6212893-6213552 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 9-679 |
| Cow position: | chr29:9619777-9620462 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 401 |
| Conread position: | 30-670 |
| Cow position: | chr29:251150-251782 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 336 |
| Conread position: | 111-662 |
| Cow position: | chr29:4633915-4633375 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 67 |
| Conread position: | 114-628 |
| Cow position: | chr29:16173859-16173350 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 8 |
| Conread position: | 140-674 |
| Cow position: | chr29:32803935-32804477 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 155 |
| Conread position: | 164-613 |
| Cow position: | chr29:32891331-32891772 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 59 |
| Conread position: | 203-678 |
| Cow position: | chr29:6265718-6265231 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 198 |
| Conread position: | 222-448 |
| Cow position: | chr29:15785380-15785152 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 121, 172 |
| Conread position: | 222-683 |
| Cow position: | chr29:8664105-8664559 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 112 |
| Conread position: | 224-681 |
| Cow position: | chr29:2949754-2949312 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 178 |
| Conread position: | 261-618 |
| Cow position: | chr29:14216589-14216948 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 261-670 |
| Cow position: | chr29:14210948-14210534 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 130 |
| Conread position: | 293-674 |
| Cow position: | chr29:41367034-41366651 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 102 |
| Conread position: | 295-675 |
| Cow position: | chr29:23976776-23977160 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 103 |
| Conread position: | 306-507 |
| Cow position: | chr29:2748587-2748383 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 340-671 |
| Cow position: | chr29:32540797-32541130 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 52 |
| Conread position: | 340-675 |
| Cow position: | chr29:42803120-42803450 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 134, 47 |
| Conread position: | 385-673 |
| Cow position: | chr29:19622537-19622246 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 385-680 |
| Cow position: | chr29:21264689-21264982 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 386-670 |
| Cow position: | chr29:646543-646829 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 51 |
| Conread position: | 425-671 |
| Cow position: | chr29:45205288-45205536 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 440-671 |
| Cow position: | chr29:19654431-19654664 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 35, 228 |
| Conread position: | 473-683 |
| Cow position: | chr29:15997831-15997618 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 483-678 |
| Cow position: | chr29:801548-801343 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 497-640 |
| Cow position: | chr29:2747573-2747426 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 506-671 |
| Cow position: | chr29:13650924-13651093 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 507-681 |
| Cow position: | chr29:27263026-27262851 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 48 |
| Conread position: | 573-681 |
| Cow position: | chr29:32641296-32641405 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.