Cow genome map
| Conread name: | mE6-MI-P-E6-ace-g-06-1-UM.s1 |
| Conread position: | 2-671 |
| Cow position: | chr3:57484458-57483780 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 274 |
| Conread position: | 3-299 |
| Cow position: | chr3:6878783-6878496 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 3-628 |
| Cow position: | chr3:19939145-19939801 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 145 |
| Conread position: | 3-644 |
| Cow position: | chr3:7480960-7480304 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 194 |
| Conread position: | 3-652 |
| Cow position: | chr3:42432505-42433148 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 3-670 |
| Cow position: | chr3:18811772-18812450 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 405 |
| Conread position: | 3-670 |
| Cow position: | chr3:23290070-23289384 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 3-671 |
| Cow position: | chr3:75040897-75040210 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-672 |
| Cow position: | chr3:21182415-21181749 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 107 |
| Conread position: | 3-672 |
| Cow position: | chr3:40823659-40824340 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 397 |
| Conread position: | 3-672 |
| Cow position: | chr3:49137266-49136608 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 3-672 |
| Cow position: | chr3:72630341-72631025 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 3-672 |
| Cow position: | chr3:78027137-78026469 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 3-673 |
| Cow position: | chr3:56340154-56339465 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 408 |
| Conread position: | 3-673 |
| Cow position: | chr3:66620445-66621135 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 408 |
| Conread position: | 3-674 |
| Cow position: | chr3:10239926-10240610 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 284 |
| Conread position: | 3-675 |
| Cow position: | chr3:45895285-45894599 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 153 |
| Conread position: | 3-675 |
| Cow position: | chr3:59861638-59862327 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 406 |
| Conread position: | 3-676 |
| Cow position: | chr3:48230183-48229525 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 3-677 |
| Cow position: | chr3:64017096-64016423 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 399 |
| Conread position: | 3-677 |
| Cow position: | chr3:79432440-79431747 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 443 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 120 |
| Conread position: | 3-678 |
| Cow position: | chr3:45974770-45975460 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 151 |
| Conread position: | 3-679 |
| Cow position: | chr3:46502806-46503505 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 409 |
| Conread position: | 3-679 |
| Cow position: | chr3:53515878-53516571 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 378 |
| Conread position: | 3-680 |
| Cow position: | chr3:58947898-58948576 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 144 |
| Conread position: | 3-681 |
| Cow position: | chr3:45774140-45773446 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 240 |
| Conread position: | 3-682 |
| Cow position: | chr3:50915598-50916296 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 3-683 |
| Cow position: | chr3:5953914-5953222 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 3-683 |
| Cow position: | chr3:19756686-19755985 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 407 |
| Conread position: | 3-683 |
| Cow position: | chr3:29578899-29579588 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 234 |
| Conread position: | 3-683 |
| Cow position: | chr3:49544938-49544248 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 4-671 |
| Cow position: | chr3:5883811-5884494 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 4-683 |
| Cow position: | chr3:2907496-2906809 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 141 |
| Conread position: | 5-210 |
| Cow position: | chr3:4028019-4028224 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 64, 158 |
| Conread position: | 5-635 |
| Cow position: | chr3:18463299-18462654 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 190 |
| Conread position: | 5-650 |
| Cow position: | chr3:23213802-23213146 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 337 |
| Conread position: | 5-670 |
| Cow position: | chr3:83232962-83232297 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 8-675 |
| Cow position: | chr3:42052876-42052200 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 200 |
| Conread position: | 8-682 |
| Cow position: | chr3:63003268-63002581 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 9-680 |
| Cow position: | chr3:6686088-6686767 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 36-675 |
| Cow position: | chr3:30314861-30315508 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 372 |
| Conread position: | 47-673 |
| Cow position: | chr3:70887466-70888093 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 8 |
| Conread position: | 56-627 |
| Cow position: | chr3:6661131-6661703 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 309 |
| Conread position: | 57-683 |
| Cow position: | chr3:65582935-65582321 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 10 |
| Conread position: | 66-679 |
| Cow position: | chr3:24353284-24353862 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 45 |
| Conread position: | 68-681 |
| Cow position: | chr3:50127312-50126664 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 331 |
| Conread position: | 76-671 |
| Cow position: | chr3:2710518-2709918 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 219 |
| Conread position: | 79-683 |
| Cow position: | chr3:19944607-19945193 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 109 |
| Conread position: | 81-680 |
| Cow position: | chr3:74227044-74226450 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 374 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 121, 30 |
| Conread position: | 101-678 |
| Cow position: | chr3:56397574-56398146 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 104 |
| Conread position: | 107-669 |
| Cow position: | chr3:38493632-38494185 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 171 |
| Conread position: | 110-678 |
| Cow position: | chr3:64357406-64356837 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 160 |
| Conread position: | 116-657 |
| Cow position: | chr3:19890211-19889665 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 274 |
| Conread position: | 175-670 |
| Cow position: | chr3:7169658-7170151 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 116 |
| Conread position: | 252-683 |
| Cow position: | chr3:3841277-3840846 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 21 |
| Conread position: | 268-672 |
| Cow position: | chr3:53411726-53412119 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 67, 101 |
| Conread position: | 278-683 |
| Cow position: | chr3:31419888-31420301 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 290-681 |
| Cow position: | chr3:12679279-12678878 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 291-682 |
| Cow position: | chr3:40342707-40343083 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 240, 39 |
| Conread position: | 295-635 |
| Cow position: | chr3:56098786-56099135 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 312-678 |
| Cow position: | chr3:6877578-6877218 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 320-674 |
| Cow position: | chr3:18355673-18355325 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 25, 69 |
| Conread position: | 331-670 |
| Cow position: | chr3:48058746-48058407 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 59 |
| Conread position: | 340-593 |
| Cow position: | chr3:3057460-3057704 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 154, 34 |
| Conread position: | 344-638 |
| Cow position: | chr3:69100852-69100557 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 75, 45 |
| Conread position: | 357-672 |
| Cow position: | chr3:18541508-18541190 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 386-671 |
| Cow position: | chr3:5994428-5994137 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 392-674 |
| Cow position: | chr3:24589094-24588812 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 393-676 |
| Cow position: | chr3:24445410-24445126 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 395-671 |
| Cow position: | chr3:77424309-77424586 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 437-683 |
| Cow position: | chr3:63200325-63200569 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 454-681 |
| Cow position: | chr3:42144134-42143902 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 19, 215 |
| Conread position: | 459-683 |
| Cow position: | chr3:30618192-30617963 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 210 |
| Conread position: | 478-674 |
| Cow position: | chr3:24346723-24346926 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 485-678 |
| Cow position: | chr3:11198793-11198598 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 45, 183 |
| Conread position: | 490-680 |
| Cow position: | chr3:4028939-4029133 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 494-681 |
| Cow position: | chr3:15181136-15181322 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 110 |
| Conread position: | 502-682 |
| Cow position: | chr3:36877906-36877722 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 510-619 |
| Cow position: | chr3:61492178-61492289 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 525-680 |
| Cow position: | chr3:34506543-34506386 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.