Cow genome map

Conread name: mE6-MI-P-E6-ace-g-06-1-UM.s1

Conread position: 3-165
Cow position: chr4:33493902-33494072 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 3-312
Cow position: chr4:17926177-17925855 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 320

Conread position: 3-333
Cow position: chr4:44725162-44725504 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 18

Conread position: 3-374
Cow position: chr4:50980296-50980668 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 238
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 19, 67

Conread position: 3-657
Cow position: chr4:46664593-46665260 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 404

Conread position: 3-671
Cow position: chr4:43881186-43881863 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 225

Conread position: 3-672
Cow position: chr4:6490287-6489605 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 120

Conread position: 3-672
Cow position: chr4:18516973-18517657 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 94

Conread position: 3-672
Cow position: chr4:25599424-25598741 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 405

Conread position: 3-672
Cow position: chr4:33072750-33072062 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 406

Conread position: 3-672
Cow position: chr4:43319569-43318884 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 400

Conread position: 3-673
Cow position: chr4:36896445-36897132 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 273

Conread position: 3-676
Cow position: chr4:32212238-32212932 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 404

Conread position: 3-677
Cow position: chr4:34184443-34183777 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 120

Conread position: 3-678
Cow position: chr4:57984058-57984743 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 389

Conread position: 3-680
Cow position: chr4:13493386-13494085 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 62

Conread position: 3-680
Cow position: chr4:31669349-31670040 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 403

Conread position: 3-682
Cow position: chr4:18424454-18423757 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 293

Conread position: 3-682
Cow position: chr4:48026474-48027168 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 294

Conread position: 5-671
Cow position: chr4:18190478-18191152 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 279

Conread position: 5-674
Cow position: chr4:31565225-31564548 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 166

Conread position: 5-676
Cow position: chr4:12241138-12240461 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 205

Conread position: 18-605
Cow position: chr4:61694422-61693848 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 89

Conread position: 50-628
Cow position: chr4:29531753-29531170 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 116

Conread position: 60-679
Cow position: chr4:27301309-27300710 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 8

Conread position: 68-559
Cow position: chr4:17587516-17587034 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 325
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 155, 45

Conread position: 69-675
Cow position: chr4:44925362-44924759 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 35

Conread position: 74-672
Cow position: chr4:39271231-39270644 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 37

Conread position: 76-681
Cow position: chr4:33595721-33596303 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 11

Conread position: 81-672
Cow position: chr4:41332869-41333459 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 193

Conread position: 105-608
Cow position: chr4:61108504-61107994 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 338
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 118, 72

Conread position: 152-434
Cow position: chr4:9103504-9103792 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 191
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 243

Conread position: 157-672
Cow position: chr4:603252-603775 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 234

Conread position: 164-600
Cow position: chr4:58689847-58689405 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 108

Conread position: 165-625
Cow position: chr4:64854021-64853551 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 101

Conread position: 177-681
Cow position: chr4:12587590-12588097 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 218

Conread position: 222-682
Cow position: chr4:10881852-10882315 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 55

Conread position: 265-676
Cow position: chr4:28831906-28832321 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 61

Conread position: 292-544
Cow position: chr4:494208-493952 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 53, 89

Conread position: 295-682
Cow position: chr4:17925583-17925196 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 96

Conread position: 304-672
Cow position: chr4:47254542-47254174 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 260
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 39, 91

Conread position: 306-677
Cow position: chr4:11110887-11110502 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 369

Conread position: 340-671
Cow position: chr4:67681616-67681949 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 52

Conread position: 340-672
Cow position: chr4:16360336-16360673 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 52

Conread position: 340-680
Cow position: chr4:1049836-1049498 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 57

Conread position: 340-683
Cow position: chr4:6206021-6206363 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 38

Conread position: 342-672
Cow position: chr4:44726023-44726353 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 50

Conread position: 344-675
Cow position: chr4:22473781-22474109 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 232
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 5, 44

Conread position: 352-672
Cow position: chr4:16639047-16639369 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 40

Conread position: 402-671
Cow position: chr4:3132115-3131846 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 185
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 78, 27

Conread position: 409-683
Cow position: chr4:19006065-19005786 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 28

Conread position: 424-673
Cow position: chr4:45298579-45298326 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 13

Conread position: 453-673
Cow position: chr4:33494125-33494350 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 22, 0

Conread position: 462-677
Cow position: chr4:49716219-49716430 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 153

Conread position: 480-682
Cow position: chr4:51042728-51042522 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 188

Conread position: 486-675
Cow position: chr4:41958983-41959176 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 525-620
Cow position: chr4:45048549-45048454 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.