Cow genome map
Conread name: | mE6-MI-P-E6-ace-g-06-1-UM.s1 |
Conread position: | 3-182 |
Cow position: | chr5:6155049-6154861 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 141 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 3-187 |
Cow position: | chr5:49119108-49118918 (view UCSC Genome Browser custom track) |
Alignm length: | 193 |
Alignm identity: | 151 |
Alignm E-value: | 9e-37 |
Alignm gaps (pig, cow): | 18, 142 |
Conread position: | 3-280 |
Cow position: | chr5:46660210-46660489 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 72 |
Conread position: | 3-507 |
Cow position: | chr5:415550-415032 (view UCSC Genome Browser custom track) |
Alignm length: | 525 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 121 |
Conread position: | 3-611 |
Cow position: | chr5:7273996-7274621 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 407 |
Conread position: | 3-628 |
Cow position: | chr5:27002205-27002815 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 37 |
Conread position: | 3-672 |
Cow position: | chr5:34696773-34697457 (view UCSC Genome Browser custom track) |
Alignm length: | 693 |
Alignm identity: | 520 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 129 |
Conread position: | 3-672 |
Cow position: | chr5:46738407-46737722 (view UCSC Genome Browser custom track) |
Alignm length: | 693 |
Alignm identity: | 520 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 172 |
Conread position: | 3-672 |
Cow position: | chr5:55628158-55628845 (view UCSC Genome Browser custom track) |
Alignm length: | 693 |
Alignm identity: | 519 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 50 |
Conread position: | 3-675 |
Cow position: | chr5:2914620-2915303 (view UCSC Genome Browser custom track) |
Alignm length: | 693 |
Alignm identity: | 514 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 121 |
Conread position: | 3-675 |
Cow position: | chr5:37732518-37733201 (view UCSC Genome Browser custom track) |
Alignm length: | 696 |
Alignm identity: | 516 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 56 |
Conread position: | 3-676 |
Cow position: | chr5:12643554-12642881 (view UCSC Genome Browser custom track) |
Alignm length: | 697 |
Alignm identity: | 508 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 369 |
Conread position: | 3-679 |
Cow position: | chr5:30579489-30580192 (view UCSC Genome Browser custom track) |
Alignm length: | 708 |
Alignm identity: | 517 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 150 |
Conread position: | 3-680 |
Cow position: | chr5:3786097-3786781 (view UCSC Genome Browser custom track) |
Alignm length: | 696 |
Alignm identity: | 518 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 169 |
Conread position: | 3-680 |
Cow position: | chr5:4069386-4070071 (view UCSC Genome Browser custom track) |
Alignm length: | 697 |
Alignm identity: | 512 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 406 |
Conread position: | 3-681 |
Cow position: | chr5:3964617-3965314 (view UCSC Genome Browser custom track) |
Alignm length: | 705 |
Alignm identity: | 517 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 280 |
Conread position: | 3-681 |
Cow position: | chr5:18122303-18121619 (view UCSC Genome Browser custom track) |
Alignm length: | 700 |
Alignm identity: | 513 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 141 |
Conread position: | 3-681 |
Cow position: | chr5:18401533-18400825 (view UCSC Genome Browser custom track) |
Alignm length: | 720 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 209 |
Conread position: | 3-681 |
Cow position: | chr5:48808563-48807875 (view UCSC Genome Browser custom track) |
Alignm length: | 699 |
Alignm identity: | 511 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 180 |
Conread position: | 3-682 |
Cow position: | chr5:35300264-35300961 (view UCSC Genome Browser custom track) |
Alignm length: | 704 |
Alignm identity: | 524 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 401 |
Conread position: | 3-682 |
Cow position: | chr5:51770778-51770087 (view UCSC Genome Browser custom track) |
Alignm length: | 702 |
Alignm identity: | 462 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 184 |
Conread position: | 3-682 |
Cow position: | chr5:57482374-57481675 (view UCSC Genome Browser custom track) |
Alignm length: | 704 |
Alignm identity: | 526 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 407 |
Conread position: | 3-682 |
Cow position: | chr5:73489389-73488695 (view UCSC Genome Browser custom track) |
Alignm length: | 701 |
Alignm identity: | 528 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 403 |
Conread position: | 3-683 |
Cow position: | chr5:3503933-3503255 (view UCSC Genome Browser custom track) |
Alignm length: | 696 |
Alignm identity: | 509 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 225 |
Conread position: | 3-683 |
Cow position: | chr5:43003265-43003945 (view UCSC Genome Browser custom track) |
Alignm length: | 695 |
Alignm identity: | 455 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 226 |
Conread position: | 4-629 |
Cow position: | chr5:41528587-41527962 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 227 |
Conread position: | 4-671 |
Cow position: | chr5:64781845-64781162 (view UCSC Genome Browser custom track) |
Alignm length: | 690 |
Alignm identity: | 518 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 291 |
Conread position: | 4-682 |
Cow position: | chr5:4385415-4386107 (view UCSC Genome Browser custom track) |
Alignm length: | 699 |
Alignm identity: | 504 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 113 |
Conread position: | 4-682 |
Cow position: | chr5:10918992-10919688 (view UCSC Genome Browser custom track) |
Alignm length: | 703 |
Alignm identity: | 521 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 410 |
Conread position: | 5-378 |
Cow position: | chr5:46664170-46664549 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 162 |
Conread position: | 5-664 |
Cow position: | chr5:35525988-35526644 (view UCSC Genome Browser custom track) |
Alignm length: | 681 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 102 |
Conread position: | 24-513 |
Cow position: | chr5:2531447-2531946 (view UCSC Genome Browser custom track) |
Alignm length: | 506 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 210 |
Conread position: | 30-635 |
Cow position: | chr5:26067696-26067079 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 178 |
Conread position: | 54-679 |
Cow position: | chr5:49129784-49130409 (view UCSC Genome Browser custom track) |
Alignm length: | 636 |
Alignm identity: | 259 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 283, 19 |
Conread position: | 68-663 |
Cow position: | chr5:49591853-49591254 (view UCSC Genome Browser custom track) |
Alignm length: | 609 |
Alignm identity: | 448 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 175 |
Conread position: | 68-674 |
Cow position: | chr5:75623957-75624545 (view UCSC Genome Browser custom track) |
Alignm length: | 613 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 260, 10 |
Conread position: | 68-675 |
Cow position: | chr5:45700558-45701169 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 146 |
Conread position: | 68-683 |
Cow position: | chr5:14785122-14784505 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 51 |
Conread position: | 76-682 |
Cow position: | chr5:28011901-28012518 (view UCSC Genome Browser custom track) |
Alignm length: | 626 |
Alignm identity: | 446 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 288 |
Conread position: | 79-683 |
Cow position: | chr5:41961470-41960872 (view UCSC Genome Browser custom track) |
Alignm length: | 612 |
Alignm identity: | 462 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 145 |
Conread position: | 95-627 |
Cow position: | chr5:47894273-47893730 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 63 |
Conread position: | 105-672 |
Cow position: | chr5:1341756-1341179 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 296 |
Conread position: | 181-682 |
Cow position: | chr5:46629830-46629316 (view UCSC Genome Browser custom track) |
Alignm length: | 525 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 9 |
Conread position: | 222-638 |
Cow position: | chr5:29766286-29766704 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 173 |
Conread position: | 245-679 |
Cow position: | chr5:28241475-28241914 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 150 |
Conread position: | 248-672 |
Cow position: | chr5:49518987-49519414 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 148 |
Conread position: | 304-680 |
Cow position: | chr5:32308912-32308531 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 254 |
Alignm E-value: | 4e-39 |
Alignm gaps (pig, cow): | 39, 92 |
Conread position: | 307-672 |
Cow position: | chr5:34902676-34903045 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 261 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 36, 85 |
Conread position: | 310-673 |
Cow position: | chr5:54861563-54861208 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 84 |
Conread position: | 320-627 |
Cow position: | chr5:28950370-28950054 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 221 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 19, 74 |
Conread position: | 340-681 |
Cow position: | chr5:6154380-6154038 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 52 |
Conread position: | 340-683 |
Cow position: | chr5:59639301-59639641 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 233 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 131, 52 |
Conread position: | 342-641 |
Cow position: | chr5:36444156-36443855 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 205 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 133, 51 |
Conread position: | 386-681 |
Cow position: | chr5:39246249-39245949 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 53 |
Conread position: | 388-682 |
Cow position: | chr5:41554765-41554472 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 42 |
Conread position: | 393-681 |
Cow position: | chr5:32947627-32947923 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 44 |
Conread position: | 401-679 |
Cow position: | chr5:1227261-1227536 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 193 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 116, 36 |
Conread position: | 402-683 |
Cow position: | chr5:27056102-27055815 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 41 |
Conread position: | 404-677 |
Cow position: | chr5:18273331-18273597 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 196 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 127, 33 |
Conread position: | 412-658 |
Cow position: | chr5:53703569-53703321 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 174 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 63, 25 |
Conread position: | 414-669 |
Cow position: | chr5:14344813-14344569 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 176 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 56, 23 |
Conread position: | 423-672 |
Cow position: | chr5:59282920-59283170 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 14 |
Conread position: | 440-671 |
Cow position: | chr5:46668574-46668798 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 175 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 86, 34 |
Conread position: | 451-682 |
Cow position: | chr5:52434182-52434409 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 155 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 75, 19 |
Conread position: | 456-674 |
Cow position: | chr5:40788693-40788920 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 157 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 19, 219 |
Conread position: | 456-675 |
Cow position: | chr5:13046084-13046303 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 161 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 24, 75 |
Conread position: | 483-682 |
Cow position: | chr5:9419409-9419203 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 158 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 46, 138 |
Conread position: | 484-681 |
Cow position: | chr5:41465736-41465936 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 141 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 48, 182 |
Conread position: | 506-674 |
Cow position: | chr5:31100739-31100569 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 129 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 22, 135 |
Show alignments to all cow chromosomes.