Cow genome map

Conread name: mE6-MI-P-E6-ace-g-06-1-UM.s1

Conread position: 3-182
Cow position: chr5:6155049-6154861 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 18, 0

Conread position: 3-187
Cow position: chr5:49119108-49118918 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 18, 142

Conread position: 3-280
Cow position: chr5:46660210-46660489 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 72

Conread position: 3-507
Cow position: chr5:415550-415032 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 121

Conread position: 3-611
Cow position: chr5:7273996-7274621 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 407

Conread position: 3-628
Cow position: chr5:27002205-27002815 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 37

Conread position: 3-672
Cow position: chr5:34696773-34697457 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 129

Conread position: 3-672
Cow position: chr5:46738407-46737722 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 172

Conread position: 3-672
Cow position: chr5:55628158-55628845 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 50

Conread position: 3-675
Cow position: chr5:2914620-2915303 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 121

Conread position: 3-675
Cow position: chr5:37732518-37733201 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 56

Conread position: 3-676
Cow position: chr5:12643554-12642881 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 369

Conread position: 3-679
Cow position: chr5:30579489-30580192 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 150

Conread position: 3-680
Cow position: chr5:3786097-3786781 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 169

Conread position: 3-680
Cow position: chr5:4069386-4070071 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 406

Conread position: 3-681
Cow position: chr5:3964617-3965314 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 280

Conread position: 3-681
Cow position: chr5:18122303-18121619 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 141

Conread position: 3-681
Cow position: chr5:18401533-18400825 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 209

Conread position: 3-681
Cow position: chr5:48808563-48807875 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 180

Conread position: 3-682
Cow position: chr5:35300264-35300961 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 401

Conread position: 3-682
Cow position: chr5:51770778-51770087 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 184

Conread position: 3-682
Cow position: chr5:57482374-57481675 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 407

Conread position: 3-682
Cow position: chr5:73489389-73488695 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 403

Conread position: 3-683
Cow position: chr5:3503933-3503255 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 225

Conread position: 3-683
Cow position: chr5:43003265-43003945 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 226

Conread position: 4-629
Cow position: chr5:41528587-41527962 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 227

Conread position: 4-671
Cow position: chr5:64781845-64781162 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 291

Conread position: 4-682
Cow position: chr5:4385415-4386107 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 113

Conread position: 4-682
Cow position: chr5:10918992-10919688 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 410

Conread position: 5-378
Cow position: chr5:46664170-46664549 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 162

Conread position: 5-664
Cow position: chr5:35525988-35526644 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 102

Conread position: 24-513
Cow position: chr5:2531447-2531946 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 210

Conread position: 30-635
Cow position: chr5:26067696-26067079 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 178

Conread position: 54-679
Cow position: chr5:49129784-49130409 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 259
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 283, 19

Conread position: 68-663
Cow position: chr5:49591853-49591254 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 175

Conread position: 68-674
Cow position: chr5:75623957-75624545 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 10

Conread position: 68-675
Cow position: chr5:45700558-45701169 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 146

Conread position: 68-683
Cow position: chr5:14785122-14784505 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 51

Conread position: 76-682
Cow position: chr5:28011901-28012518 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 288

Conread position: 79-683
Cow position: chr5:41961470-41960872 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 145

Conread position: 95-627
Cow position: chr5:47894273-47893730 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 63

Conread position: 105-672
Cow position: chr5:1341756-1341179 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 296

Conread position: 181-682
Cow position: chr5:46629830-46629316 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 9

Conread position: 222-638
Cow position: chr5:29766286-29766704 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 173

Conread position: 245-679
Cow position: chr5:28241475-28241914 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 150

Conread position: 248-672
Cow position: chr5:49518987-49519414 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 148

Conread position: 304-680
Cow position: chr5:32308912-32308531 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 254
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 39, 92

Conread position: 307-672
Cow position: chr5:34902676-34903045 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 261
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 36, 85

Conread position: 310-673
Cow position: chr5:54861563-54861208 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 84

Conread position: 320-627
Cow position: chr5:28950370-28950054 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 19, 74

Conread position: 340-681
Cow position: chr5:6154380-6154038 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 52

Conread position: 340-683
Cow position: chr5:59639301-59639641 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 233
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 131, 52

Conread position: 342-641
Cow position: chr5:36444156-36443855 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 133, 51

Conread position: 386-681
Cow position: chr5:39246249-39245949 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 53

Conread position: 388-682
Cow position: chr5:41554765-41554472 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 42

Conread position: 393-681
Cow position: chr5:32947627-32947923 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 44

Conread position: 401-679
Cow position: chr5:1227261-1227536 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 116, 36

Conread position: 402-683
Cow position: chr5:27056102-27055815 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 41

Conread position: 404-677
Cow position: chr5:18273331-18273597 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 127, 33

Conread position: 412-658
Cow position: chr5:53703569-53703321 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 63, 25

Conread position: 414-669
Cow position: chr5:14344813-14344569 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 23

Conread position: 423-672
Cow position: chr5:59282920-59283170 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 14

Conread position: 440-671
Cow position: chr5:46668574-46668798 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 86, 34

Conread position: 451-682
Cow position: chr5:52434182-52434409 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 155
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 75, 19

Conread position: 456-674
Cow position: chr5:40788693-40788920 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 19, 219

Conread position: 456-675
Cow position: chr5:13046084-13046303 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 24, 75

Conread position: 483-682
Cow position: chr5:9419409-9419203 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 46, 138

Conread position: 484-681
Cow position: chr5:41465736-41465936 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 48, 182

Conread position: 506-674
Cow position: chr5:31100739-31100569 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 22, 135

Show alignments to all cow chromosomes.