Cow genome map

Conread name: mE6-MI-P-E6-ace-g-06-1-UM.s1

Conread position: 1-626
Cow position: chr6:27332091-27332699 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 409
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 31, 119

Conread position: 3-219
Cow position: chr6:55544012-55543788 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 3-239
Cow position: chr6:25214568-25214815 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 0

Conread position: 3-263
Cow position: chr6:8202051-8202316 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 224

Conread position: 3-272
Cow position: chr6:58027066-58027343 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 3-300
Cow position: chr6:64715543-64715847 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 289

Conread position: 3-309
Cow position: chr6:39437860-39438172 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 190

Conread position: 3-377
Cow position: chr6:10643860-10644237 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 222

Conread position: 3-467
Cow position: chr6:65841901-65842369 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 140

Conread position: 3-560
Cow position: chr6:38900857-38900291 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 14

Conread position: 3-565
Cow position: chr6:28275290-28275866 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 233

Conread position: 3-618
Cow position: chr6:27470911-27471539 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 399

Conread position: 3-660
Cow position: chr6:8021239-8021864 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 107

Conread position: 3-670
Cow position: chr6:40315697-40316381 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 201

Conread position: 3-671
Cow position: chr6:20560799-20560109 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 324

Conread position: 3-672
Cow position: chr6:5949467-5948783 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 406

Conread position: 3-672
Cow position: chr6:15140870-15140183 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 401

Conread position: 3-672
Cow position: chr6:17046367-17047047 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 386

Conread position: 3-672
Cow position: chr6:24239368-24240047 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 155

Conread position: 3-672
Cow position: chr6:51086253-51086937 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 142

Conread position: 3-673
Cow position: chr6:30479417-30480096 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 228

Conread position: 3-676
Cow position: chr6:185475-184785 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 111

Conread position: 3-677
Cow position: chr6:11724797-11724120 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 47

Conread position: 3-678
Cow position: chr6:27529694-27529001 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 284

Conread position: 3-680
Cow position: chr6:8760991-8760288 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 124

Conread position: 3-681
Cow position: chr6:6566920-6567594 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 70

Conread position: 3-681
Cow position: chr6:47042885-47042198 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 244

Conread position: 3-682
Cow position: chr6:331159-330459 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 401

Conread position: 3-682
Cow position: chr6:40275395-40276091 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 335

Conread position: 3-682
Cow position: chr6:43793403-43792713 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 94

Conread position: 3-683
Cow position: chr6:1822319-1821620 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 405

Conread position: 3-683
Cow position: chr6:21972965-21973659 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 274

Conread position: 3-683
Cow position: chr6:35876402-35875710 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 229

Conread position: 3-683
Cow position: chr6:40554267-40553581 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 39

Conread position: 3-683
Cow position: chr6:52693337-52694020 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 142

Conread position: 4-621
Cow position: chr6:12529799-12530429 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 5-676
Cow position: chr6:66232127-66232816 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 115

Conread position: 5-677
Cow position: chr6:28105538-28104862 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 8

Conread position: 8-673
Cow position: chr6:65941515-65940827 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 118

Conread position: 14-626
Cow position: chr6:15021543-15022156 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 395
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 16, 175

Conread position: 18-676
Cow position: chr6:58600813-58601478 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 19

Conread position: 31-682
Cow position: chr6:59918731-59918071 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 373

Conread position: 41-638
Cow position: chr6:34005026-34004441 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 75

Conread position: 47-653
Cow position: chr6:3488063-3487447 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 354

Conread position: 67-676
Cow position: chr6:6475487-6474869 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 32

Conread position: 68-664
Cow position: chr6:186089-185481 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 329

Conread position: 68-681
Cow position: chr6:538384-538986 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 109

Conread position: 76-374
Cow position: chr6:51714092-51714395 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 87

Conread position: 79-674
Cow position: chr6:914027-914625 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 125

Conread position: 104-682
Cow position: chr6:28133354-28133935 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 138

Conread position: 154-682
Cow position: chr6:43999527-44000065 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 242

Conread position: 222-674
Cow position: chr6:65881751-65882207 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 175

Conread position: 224-679
Cow position: chr6:25214766-25215220 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 14

Conread position: 228-674
Cow position: chr6:8202727-8203179 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 164

Conread position: 236-673
Cow position: chr6:55542700-55542270 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 160

Conread position: 238-683
Cow position: chr6:50634526-50634945 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 84

Conread position: 283-678
Cow position: chr6:11274296-11273913 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 274
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 60, 37

Conread position: 283-682
Cow position: chr6:38271501-38271893 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 115

Conread position: 295-672
Cow position: chr6:15279195-15278817 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 96

Conread position: 295-672
Cow position: chr6:39438378-39438759 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 100

Conread position: 295-683
Cow position: chr6:3276763-3276369 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 101

Conread position: 296-627
Cow position: chr6:56043106-56042770 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 43, 99

Conread position: 296-672
Cow position: chr6:40866705-40866330 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 100

Conread position: 304-651
Cow position: chr6:51730718-51731071 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 88

Conread position: 304-672
Cow position: chr6:30274271-30273901 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 92

Conread position: 306-682
Cow position: chr6:1099531-1099155 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 253
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 33, 63

Conread position: 320-682
Cow position: chr6:28169540-28169908 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 77

Conread position: 324-683
Cow position: chr6:13316831-13316466 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 71

Conread position: 340-529
Cow position: chr6:36526922-36527114 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 36, 73

Conread position: 340-682
Cow position: chr6:702862-703221 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 52

Conread position: 340-682
Cow position: chr6:39334209-39333865 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 52

Conread position: 378-682
Cow position: chr6:10644441-10644744 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 60

Conread position: 385-682
Cow position: chr6:58027377-58027678 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 53

Conread position: 386-670
Cow position: chr6:11404234-11404522 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 197
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 9, 22

Conread position: 386-680
Cow position: chr6:51715243-51715539 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 52

Conread position: 389-657
Cow position: chr6:6157263-6157521 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 232, 13

Conread position: 389-680
Cow position: chr6:58065441-58065742 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 138, 48

Conread position: 393-548
Cow position: chr6:29312237-29312396 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 82, 44

Conread position: 393-640
Cow position: chr6:64716699-64716949 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 82, 34

Conread position: 393-668
Cow position: chr6:4259034-4258758 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 185
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 36

Conread position: 393-672
Cow position: chr6:34891413-34891130 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 44

Conread position: 423-676
Cow position: chr6:17597577-17597312 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 51, 14

Conread position: 436-677
Cow position: chr6:65842378-65842621 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 203

Conread position: 447-663
Cow position: chr6:25794049-25793827 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 28, 0

Conread position: 473-682
Cow position: chr6:15926794-15926579 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 478-682
Cow position: chr6:18973611-18973402 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 165
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 53, 193

Conread position: 482-682
Cow position: chr6:15477964-15478161 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 126, 12

Conread position: 493-680
Cow position: chr6:7178482-7178291 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 18

Conread position: 510-683
Cow position: chr6:36527130-36527305 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 158

Conread position: 525-683
Cow position: chr6:21836346-21836189 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 23

Conread position: 547-675
Cow position: chr6:1535708-1535580 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 85, 119

Show alignments to all cow chromosomes.