Cow genome map

Conread name: mE6-MI-P-E6-ace-g-06-1-UM.s1

Conread position: 2-582
Cow position: chrX:30711731-30712327 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 265

Conread position: 3-337
Cow position: chrX:22582584-22582248 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 184

Conread position: 3-444
Cow position: chrX:2012512-2012078 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 290
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 18, 103

Conread position: 3-489
Cow position: chrX:29793975-29793480 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 211

Conread position: 3-570
Cow position: chrX:24478931-24478361 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 3-598
Cow position: chrX:27960711-27961312 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 53

Conread position: 3-605
Cow position: chrX:31198589-31199214 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 409

Conread position: 3-637
Cow position: chrX:23070862-23071489 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 404
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 32

Conread position: 3-650
Cow position: chrX:970917-971584 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 406

Conread position: 3-658
Cow position: chrX:12353382-12354058 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 401

Conread position: 3-670
Cow position: chrX:23040978-23040294 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 120

Conread position: 3-671
Cow position: chrX:26758458-26757785 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 297

Conread position: 3-672
Cow position: chrX:21579618-21580295 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 91

Conread position: 3-672
Cow position: chrX:23277168-23277856 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 156

Conread position: 3-672
Cow position: chrX:26528124-26528805 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 402

Conread position: 3-672
Cow position: chrX:29096350-29097025 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 330

Conread position: 3-673
Cow position: chrX:21829673-21830359 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 406

Conread position: 3-674
Cow position: chrX:20720132-20720827 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 406

Conread position: 3-676
Cow position: chrX:1547123-1547807 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 404

Conread position: 3-676
Cow position: chrX:15127093-15126402 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 405

Conread position: 3-676
Cow position: chrX:23019473-23020163 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 192

Conread position: 3-678
Cow position: chrX:29950442-29949769 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 323

Conread position: 3-680
Cow position: chrX:5336344-5335646 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 401

Conread position: 3-680
Cow position: chrX:13412991-13412293 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 408

Conread position: 3-680
Cow position: chrX:28553791-28554449 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 179

Conread position: 3-681
Cow position: chrX:2482488-2481791 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 322

Conread position: 3-681
Cow position: chrX:15179290-15178586 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 408

Conread position: 3-682
Cow position: chrX:13053169-13053848 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 121

Conread position: 3-682
Cow position: chrX:13417279-13416596 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 55

Conread position: 3-682
Cow position: chrX:17667751-17667046 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 195

Conread position: 3-682
Cow position: chrX:21058940-21059622 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 65

Conread position: 3-682
Cow position: chrX:22619166-22618458 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 410

Conread position: 3-682
Cow position: chrX:26400035-26399340 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 195

Conread position: 3-682
Cow position: chrX:30231960-30231257 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 238

Conread position: 3-683
Cow position: chrX:16699449-16700144 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 401

Conread position: 3-683
Cow position: chrX:26767049-26766368 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 277

Conread position: 3-683
Cow position: chrX:29285587-29286272 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 114

Conread position: 3-683
Cow position: chrX:29853420-29852724 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 142

Conread position: 4-671
Cow position: chrX:41851050-41850370 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 202

Conread position: 5-298
Cow position: chrX:23391448-23391143 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 226

Conread position: 5-683
Cow position: chrX:21589118-21589809 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 231

Conread position: 6-680
Cow position: chrX:320615-321304 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 398

Conread position: 8-619
Cow position: chrX:12478879-12479484 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 8-672
Cow position: chrX:6282598-6281929 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 161

Conread position: 8-679
Cow position: chrX:1833968-1834657 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 10

Conread position: 9-672
Cow position: chrX:4796458-4797154 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 229

Conread position: 13-658
Cow position: chrX:24196232-24195581 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 336

Conread position: 18-600
Cow position: chrX:20797145-20797730 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 23

Conread position: 29-671
Cow position: chrX:23214185-23213519 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 387

Conread position: 31-683
Cow position: chrX:29885164-29885828 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 255

Conread position: 41-678
Cow position: chrX:21269852-21269226 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 189

Conread position: 41-682
Cow position: chrX:29779306-29778667 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 160

Conread position: 68-681
Cow position: chrX:28651328-28650713 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 99

Conread position: 68-682
Cow position: chrX:16016208-16015597 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 130

Conread position: 79-672
Cow position: chrX:15599197-15599795 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 144

Conread position: 83-682
Cow position: chrX:5283547-5282929 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 313

Conread position: 104-681
Cow position: chrX:28627386-28626797 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 60

Conread position: 146-683
Cow position: chrX:22488443-22488987 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 247

Conread position: 173-671
Cow position: chrX:18953361-18952852 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 228

Conread position: 208-682
Cow position: chrX:4753245-4752779 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 313
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 133

Conread position: 222-682
Cow position: chrX:22816223-22816689 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 174

Conread position: 224-679
Cow position: chrX:30366391-30365946 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 33

Conread position: 224-681
Cow position: chrX:5304533-5304994 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 66

Conread position: 229-508
Cow position: chrX:32407267-32407550 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 189
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 110, 75

Conread position: 251-676
Cow position: chrX:16041785-16041367 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 299
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 88, 22

Conread position: 257-601
Cow position: chrX:30183509-30183161 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 139

Conread position: 279-677
Cow position: chrX:5297117-5296715 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 117

Conread position: 281-654
Cow position: chrX:20505976-20506351 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 240
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 125, 79

Conread position: 287-529
Cow position: chrX:31372258-31372497 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 52, 16

Conread position: 292-673
Cow position: chrX:6242149-6241776 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 104

Conread position: 295-554
Cow position: chrX:5971397-5971139 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 49, 74

Conread position: 295-625
Cow position: chrX:30140247-30139910 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 20

Conread position: 295-672
Cow position: chrX:23390070-23389687 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 101

Conread position: 305-677
Cow position: chrX:38148051-38148425 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 55

Conread position: 310-683
Cow position: chrX:18610933-18610560 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 50

Conread position: 318-672
Cow position: chrX:12315285-12314926 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 78

Conread position: 335-671
Cow position: chrX:27315766-27316105 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 57

Conread position: 341-673
Cow position: chrX:12183414-12183748 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 32

Conread position: 343-682
Cow position: chrX:44388270-44388610 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 45

Conread position: 344-632
Cow position: chrX:19874891-19875181 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 33, 46

Conread position: 378-677
Cow position: chrX:13082477-13082176 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 208
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 16, 66

Conread position: 386-672
Cow position: chrX:18552969-18553259 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 9, 52

Conread position: 393-613
Cow position: chrX:13182572-13182346 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 56, 44

Conread position: 402-683
Cow position: chrX:9093114-9093399 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 35

Conread position: 404-672
Cow position: chrX:23455460-23455187 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 34

Conread position: 404-673
Cow position: chrX:12461378-12461644 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 71, 33

Conread position: 406-674
Cow position: chrX:2576981-2577255 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 68, 31

Conread position: 473-682
Cow position: chrX:41102838-41102626 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 58, 102

Conread position: 481-683
Cow position: chrX:29793398-29793193 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 156

Conread position: 495-683
Cow position: chrX:27593340-27593149 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 36, 172

Conread position: 500-683
Cow position: chrX:16779964-16780146 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 31, 11

Conread position: 506-681
Cow position: chrX:24377653-24377836 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 519-669
Cow position: chrX:15487075-15486922 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 535-683
Cow position: chrX:34219004-34219150 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.