Cow genome map

Conread name: mE6-MI-P-E6-acg-d-10-1-UM.s1

Conread position: 22-236
Cow position: chr26:20299472-20299679 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 94, 112

Conread position: 23-231
Cow position: chr26:8352261-8352057 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 119, 28

Conread position: 23-316
Cow position: chr26:24239227-24238932 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 93, 176

Conread position: 23-338
Cow position: chr26:25340410-25340723 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 78

Conread position: 24-338
Cow position: chr26:3556591-3556890 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 64

Conread position: 25-189
Cow position: chr26:14897614-14897445 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 91, 0

Conread position: 25-214
Cow position: chr26:3185134-3184938 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 25-332
Cow position: chr26:34015363-34015057 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 171

Conread position: 25-336
Cow position: chr26:9100467-9100769 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 149

Conread position: 25-338
Cow position: chr26:9835997-9835676 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 90, 181

Conread position: 25-338
Cow position: chr26:17327695-17327371 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 178

Conread position: 26-182
Cow position: chr26:6837146-6836985 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 90, 0

Conread position: 26-191
Cow position: chr26:15559010-15558842 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 113, 81

Conread position: 26-213
Cow position: chr26:5767419-5767234 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 90, 65

Conread position: 26-241
Cow position: chr26:8810379-8810163 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 113, 68

Conread position: 26-259
Cow position: chr26:11296879-11297116 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 90, 48

Conread position: 26-274
Cow position: chr26:6476152-6476403 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 90, 180

Conread position: 26-305
Cow position: chr26:14173588-14173305 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 89, 187

Conread position: 26-321
Cow position: chr26:20218768-20218481 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 90, 59

Conread position: 26-337
Cow position: chr26:17393374-17393685 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 170

Conread position: 26-338
Cow position: chr26:800203-799890 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 180

Conread position: 26-338
Cow position: chr26:3187281-3186969 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 59

Conread position: 26-338
Cow position: chr26:5680066-5679739 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 181

Conread position: 26-338
Cow position: chr26:13183835-13183519 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 180

Conread position: 26-338
Cow position: chr26:13773576-13773262 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 180

Conread position: 26-338
Cow position: chr26:17182586-17182292 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 110

Conread position: 26-338
Cow position: chr26:17428950-17429266 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 170

Conread position: 26-338
Cow position: chr26:22831514-22831827 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 76

Conread position: 26-338
Cow position: chr26:23889932-23889621 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 58

Conread position: 26-338
Cow position: chr26:26238524-26238211 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 180

Conread position: 26-338
Cow position: chr26:28706538-28706849 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 58

Conread position: 26-338
Cow position: chr26:30585833-30586136 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 90, 71

Conread position: 26-338
Cow position: chr26:35560538-35560852 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 58

Conread position: 27-173
Cow position: chr26:755850-756001 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 86, 0

Conread position: 27-174
Cow position: chr26:30652849-30653001 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 27-212
Cow position: chr26:16720000-16719809 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 60, 74

Conread position: 27-220
Cow position: chr26:19177582-19177388 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 89, 0

Conread position: 27-336
Cow position: chr26:11370217-11369908 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 60, 76

Conread position: 27-338
Cow position: chr26:1885534-1885221 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 151

Conread position: 27-338
Cow position: chr26:6082602-6082915 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 206
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 89, 73

Conread position: 27-338
Cow position: chr26:6843696-6844011 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 169

Conread position: 27-338
Cow position: chr26:14487737-14488046 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 184

Conread position: 27-338
Cow position: chr26:34265489-34265173 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 180

Conread position: 28-337
Cow position: chr26:10698989-10699286 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 213
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 88, 78

Conread position: 28-338
Cow position: chr26:9115561-9115248 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 59

Conread position: 28-338
Cow position: chr26:22691909-22691599 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 79

Conread position: 29-178
Cow position: chr26:3706088-3705934 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 29-186
Cow position: chr26:21538915-21538753 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 29-203
Cow position: chr26:13976582-13976762 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 69, 47

Conread position: 29-233
Cow position: chr26:3097127-3097335 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 87, 177

Conread position: 29-233
Cow position: chr26:11537347-11537139 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 87, 177

Conread position: 29-261
Cow position: chr26:7677256-7677019 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 87, 177

Conread position: 29-287
Cow position: chr26:17169352-17169090 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 87, 177

Conread position: 29-294
Cow position: chr26:30786449-30786182 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 84, 177

Conread position: 29-310
Cow position: chr26:29433754-29433469 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 177

Conread position: 29-322
Cow position: chr26:18877331-18877032 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 59

Conread position: 29-323
Cow position: chr26:8873367-8873070 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 138

Conread position: 29-337
Cow position: chr26:3230988-3230677 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 175

Conread position: 29-338
Cow position: chr26:387202-386889 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 177

Conread position: 29-338
Cow position: chr26:614674-614995 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 162

Conread position: 29-338
Cow position: chr26:1346472-1346785 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 177

Conread position: 29-338
Cow position: chr26:1390504-1390191 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 177

Conread position: 29-338
Cow position: chr26:2202050-2201739 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 164

Conread position: 29-338
Cow position: chr26:3564517-3564830 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 177

Conread position: 29-338
Cow position: chr26:3833556-3833243 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 177

Conread position: 29-338
Cow position: chr26:3862557-3862869 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 140

Conread position: 29-338
Cow position: chr26:4728803-4729115 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 140

Conread position: 29-338
Cow position: chr26:7559094-7559407 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 55

Conread position: 29-338
Cow position: chr26:8738895-8739208 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 177

Conread position: 29-338
Cow position: chr26:12585016-12585329 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 177

Conread position: 29-338
Cow position: chr26:12662223-12662522 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 88, 24

Conread position: 29-338
Cow position: chr26:13806507-13806818 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 82

Conread position: 29-338
Cow position: chr26:18857637-18857329 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 117

Conread position: 29-338
Cow position: chr26:23591217-23590904 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 177

Conread position: 29-338
Cow position: chr26:26286382-26286068 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 178

Conread position: 29-338
Cow position: chr26:30594107-30594420 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 177

Conread position: 29-338
Cow position: chr26:35121721-35122033 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 57

Conread position: 29-338
Cow position: chr26:35191026-35191338 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 177

Conread position: 29-338
Cow position: chr26:35424019-35423708 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 167

Conread position: 30-203
Cow position: chr26:581243-581422 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 30-215
Cow position: chr26:18933822-18934012 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 86, 135

Conread position: 30-227
Cow position: chr26:16864795-16864594 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 86, 176

Conread position: 30-265
Cow position: chr26:30752817-30753058 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 17, 177

Conread position: 30-291
Cow position: chr26:3026918-3027183 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 17, 144

Conread position: 30-338
Cow position: chr26:1088699-1088393 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 105

Conread position: 30-338
Cow position: chr26:1342773-1343086 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 177

Conread position: 30-338
Cow position: chr26:7459441-7459755 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 178

Conread position: 30-338
Cow position: chr26:15146016-15145703 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 177

Conread position: 30-338
Cow position: chr26:15199547-15199237 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 20

Conread position: 30-338
Cow position: chr26:18803847-18804161 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 178

Conread position: 30-338
Cow position: chr26:20256144-20255838 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 174

Conread position: 31-321
Cow position: chr26:20019622-20019327 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 176

Conread position: 31-325
Cow position: chr26:21823086-21823366 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 84, 14

Conread position: 32-332
Cow position: chr26:21859103-21858817 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 206
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 149

Conread position: 33-338
Cow position: chr26:9070080-9069770 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 173

Conread position: 34-338
Cow position: chr26:4324204-4324506 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 93

Conread position: 34-338
Cow position: chr26:4440249-4440545 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 82, 171

Conread position: 34-338
Cow position: chr26:8885360-8885053 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 172

Conread position: 34-338
Cow position: chr26:10490756-10490453 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 79, 152

Conread position: 42-286
Cow position: chr26:2670311-2670557 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 74, 154

Conread position: 45-289
Cow position: chr26:30725411-30725660 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 67, 236

Conread position: 45-338
Cow position: chr26:8084332-8084035 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 161

Conread position: 50-212
Cow position: chr26:6098063-6098229 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 156

Conread position: 59-214
Cow position: chr26:14395989-14396148 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 59-338
Cow position: chr26:6430075-6429795 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 26

Conread position: 59-338
Cow position: chr26:21350993-21350714 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 56, 147

Show alignments to all cow chromosomes.