Cow genome map

Conread name: mE6-MI-P-E6-acg-d-10-1-UM.s1

Conread position: 20-265
Cow position: chr27:9090124-9089881 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 96, 71

Conread position: 23-264
Cow position: chr27:11256203-11256446 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 78, 68

Conread position: 23-338
Cow position: chr27:2682003-2681687 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 183

Conread position: 23-338
Cow position: chr27:4982855-4982536 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 173

Conread position: 23-338
Cow position: chr27:5914411-5914097 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 79

Conread position: 23-338
Cow position: chr27:5925746-5925437 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 228
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 20, 151

Conread position: 23-338
Cow position: chr27:8291325-8291007 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 184

Conread position: 23-338
Cow position: chr27:8427333-8427021 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 84

Conread position: 23-338
Cow position: chr27:15870536-15870846 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 160

Conread position: 23-338
Cow position: chr27:27930679-27930372 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 120

Conread position: 24-193
Cow position: chr27:8262319-8262146 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 24-338
Cow position: chr27:21392492-21392176 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 163

Conread position: 24-338
Cow position: chr27:30036354-30036033 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 62

Conread position: 25-205
Cow position: chr27:2936302-2936122 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 91, 63

Conread position: 25-254
Cow position: chr27:27054011-27054248 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 52, 171

Conread position: 25-263
Cow position: chr27:30677605-30677841 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 87, 117

Conread position: 25-318
Cow position: chr27:4818893-4818599 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 192
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 121, 166

Conread position: 25-338
Cow position: chr27:13353787-13353470 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 122

Conread position: 25-338
Cow position: chr27:15866822-15867131 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 174

Conread position: 25-338
Cow position: chr27:21451924-21451608 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 181

Conread position: 25-338
Cow position: chr27:30306788-30307105 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 168

Conread position: 26-188
Cow position: chr27:13409475-13409307 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 90, 0

Conread position: 26-206
Cow position: chr27:816283-816469 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 90, 0

Conread position: 26-209
Cow position: chr27:29811784-29811596 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 162

Conread position: 26-221
Cow position: chr27:4834624-4834427 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 90, 153

Conread position: 26-265
Cow position: chr27:16331999-16332242 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 90, 180

Conread position: 26-268
Cow position: chr27:15100121-15099875 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 90, 57

Conread position: 26-292
Cow position: chr27:12239547-12239278 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 179

Conread position: 26-336
Cow position: chr27:11481411-11481097 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 180

Conread position: 26-337
Cow position: chr27:14380783-14380469 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 179

Conread position: 26-338
Cow position: chr27:344450-344759 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 180

Conread position: 26-338
Cow position: chr27:1189142-1188830 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 167

Conread position: 26-338
Cow position: chr27:2001325-2001010 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 180

Conread position: 26-338
Cow position: chr27:2331983-2331667 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 63

Conread position: 26-338
Cow position: chr27:3990320-3990636 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 170

Conread position: 26-338
Cow position: chr27:4331259-4331576 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 59

Conread position: 26-338
Cow position: chr27:6523800-6524114 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 216
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 109, 179

Conread position: 26-338
Cow position: chr27:8201415-8201102 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 170

Conread position: 26-338
Cow position: chr27:9262797-9263113 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 214
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 87, 167

Conread position: 26-338
Cow position: chr27:10383911-10383612 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 90, 121

Conread position: 26-338
Cow position: chr27:11434647-11434339 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 134

Conread position: 26-338
Cow position: chr27:13901604-13901288 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 170

Conread position: 26-338
Cow position: chr27:15033411-15033727 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 170

Conread position: 26-338
Cow position: chr27:15633863-15634178 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 156

Conread position: 26-338
Cow position: chr27:19423898-19424213 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 24

Conread position: 26-338
Cow position: chr27:19523230-19523544 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 24

Conread position: 26-338
Cow position: chr27:24239650-24239950 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 213
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 87, 163

Conread position: 26-338
Cow position: chr27:24295780-24296105 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 263

Conread position: 26-338
Cow position: chr27:26330412-26330096 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 170

Conread position: 26-338
Cow position: chr27:27291873-27291553 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 63

Conread position: 27-161
Cow position: chr27:13273045-13272907 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 89, 16

Conread position: 27-216
Cow position: chr27:28984245-28984055 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 16, 81

Conread position: 27-247
Cow position: chr27:11490101-11489875 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 89, 0

Conread position: 27-338
Cow position: chr27:3653220-3653536 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 180

Conread position: 27-338
Cow position: chr27:27729012-27729323 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 136

Conread position: 28-306
Cow position: chr27:4389466-4389199 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 87, 113

Conread position: 28-338
Cow position: chr27:15406100-15405792 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 64

Conread position: 29-214
Cow position: chr27:19300089-19300278 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 87, 177

Conread position: 29-285
Cow position: chr27:3649958-3649698 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 87, 177

Conread position: 29-315
Cow position: chr27:8959539-8959829 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 177

Conread position: 29-332
Cow position: chr27:5983553-5983860 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 167

Conread position: 29-338
Cow position: chr27:165443-165755 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 62

Conread position: 29-338
Cow position: chr27:1521151-1520844 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 152

Conread position: 29-338
Cow position: chr27:10579420-10579111 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 52

Conread position: 29-338
Cow position: chr27:13317032-13316727 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 70

Conread position: 29-338
Cow position: chr27:16030920-16031233 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 62

Conread position: 29-338
Cow position: chr27:22797182-22797493 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 58

Conread position: 29-338
Cow position: chr27:26785294-26784986 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 177

Conread position: 30-193
Cow position: chr27:10324453-10324618 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 108, 0

Conread position: 30-193
Cow position: chr27:13422687-13422856 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 30-338
Cow position: chr27:3232058-3232370 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 166

Conread position: 30-338
Cow position: chr27:9333143-9332842 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 166

Conread position: 30-338
Cow position: chr27:9970648-9970335 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 177

Conread position: 30-338
Cow position: chr27:12006625-12006312 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 177

Conread position: 30-338
Cow position: chr27:14297683-14297371 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 176

Conread position: 30-338
Cow position: chr27:20810892-20810585 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 166

Conread position: 30-338
Cow position: chr27:29035905-29036216 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 177

Conread position: 31-338
Cow position: chr27:17565167-17565470 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 201
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 200, 19

Conread position: 31-338
Cow position: chr27:20765212-20764911 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 205, 44

Conread position: 32-338
Cow position: chr27:2557518-2557827 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 165

Conread position: 34-320
Cow position: chr27:13182813-13183090 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 82, 130

Conread position: 34-338
Cow position: chr27:25784289-25784589 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 20, 175

Conread position: 35-338
Cow position: chr27:1501984-1501689 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 215
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 81, 170

Conread position: 36-338
Cow position: chr27:18954513-18954207 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 199
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 66, 61

Conread position: 41-330
Cow position: chr27:16787833-16788124 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 165

Conread position: 45-215
Cow position: chr27:491544-491366 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 45-338
Cow position: chr27:22647171-22647468 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 161

Show alignments to all cow chromosomes.