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Cow genome map

           
Conread name:
           
mE6-MI-P-E6-acx-c-02-1-UM.s1
        

               
Conread position:
               
1-166
               

               
Cow position:
               
chr9:45484495-45484331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr9:5455627-5455434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr9:34355599-34355800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr9:53777992-53778238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr9:3379445-3379206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr9:58647376-58647126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr9:37528790-37528522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr9:22227752-22228018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 123
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr9:53608060-53608330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr9:8997890-8997614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
11, 270
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr9:20393794-20394056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
9, 122
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr9:49982763-49983034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
11, 139
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr9:24726344-24726613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
8, 120
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr9:31077344-31077618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
7, 139
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr9:52689293-52689558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:28773451-28773181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
7, 123
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr9:32812680-32812401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr9:9491122-9490847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr9:57950996-57951270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr9:58439452-58439727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr9:2023028-2022745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 143
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr9:4928959-4928682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr9:42998128-42998416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
7, 126
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr9:17785125-17785406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr9:23028134-23027820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
6, 82
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr9:59507405-59507104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr9:10092061-10092385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
8, 46
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr9:18162818-18163170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr9:1951936-1952294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr9:3411102-3410758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr9:43023755-43023394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
8, 87
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr9:10632380-10632013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
7, 119
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr9:4534649-4535015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 28
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr9:12284893-12284521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
9, 141
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr9:51318092-51317714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
7, 119
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr9:13994522-13994120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 296
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr9:38344229-38343831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 277
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr9:5510058-5509654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 139
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr9:10118333-10118733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr9:19714404-19713996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr9:38961103-38961516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 123
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr9:4267659-4268078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr9:23388345-23388767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr9:33093278-33092863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 105
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chr9:5594834-5594406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 139
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr9:1520395-1520836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 140
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr9:8534352-8534793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr9:63746135-63745717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chr9:55074801-55075242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 64
               

               
Conread position:
               
1-467
               

               
Cow position:
               
chr9:42445639-42446105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
1-486
               

               
Cow position:
               
chr9:64050226-64050704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
1-492
               

               
Cow position:
               
chr9:18215579-18216070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
1-493
               

               
Cow position:
               
chr9:47926239-47925788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr9:22443281-22443784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr9:31078749-31079229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
1-499
               

               
Cow position:
               
chr9:33823425-33822952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
11, 84
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chr9:37017218-37016731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 139
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chr9:56031995-56032487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 131
               

               
Conread position:
               
1-505
               

               
Cow position:
               
chr9:64092020-64091518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chr9:38793353-38792843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 195
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chr9:61022943-61022448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chr9:28726392-28726904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chr9:35167505-35166994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chr9:41680067-41679587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chr9:5433965-5433468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chr9:8998689-8998175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chr9:9443258-9443779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 129
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chr9:15805587-15806104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 139
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chr9:22318672-22318183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 122
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chr9:26404123-26403617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 139
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr9:8636991-8636499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr9:9199451-9199950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 140
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr9:9516437-9516927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 122
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr9:648108-647592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr9:13169339-13169845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr9:18381194-18380686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 125
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr9:10308674-10308940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 116
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr9:8099493-8099759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr9:26391097-26390819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr9:3924951-3924675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr9:1997462-1997163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
2-394
               

               
Cow position:
               
chr9:21030650-21030257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
2-419
               

               
Cow position:
               
chr9:3220452-3220060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 68
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chr9:4858871-4858451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
6, 119
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chr9:5763297-5763714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 141
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chr9:34310367-34309945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 141
               

               
Conread position:
               
2-439
               

               
Cow position:
               
chr9:33682008-33681563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
2-439
               

               
Cow position:
               
chr9:62442614-62442194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 93
               

               
Conread position:
               
2-451
               

               
Cow position:
               
chr9:29184804-29185247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 31
               

               
Conread position:
               
2-455
               

               
Cow position:
               
chr9:44831724-44832170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 76
               

               
Conread position:
               
2-458
               

               
Cow position:
               
chr9:61997263-61997722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 250
               

               
Conread position:
               
2-470
               

               
Cow position:
               
chr9:9461324-9461780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 50
               

               
Conread position:
               
2-492
               

               
Cow position:
               
chr9:3932298-3931818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
2-505
               

               
Cow position:
               
chr9:32677015-32676506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
2-507
               

               
Cow position:
               
chr9:19903385-19902918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
2-508
               

               
Cow position:
               
chr9:63784593-63785085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
2-509
               

               
Cow position:
               
chr9:3388024-3387541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 95
               

               
Conread position:
               
2-512
               

               
Cow position:
               
chr9:5442322-5441833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 65
               

               
Conread position:
               
2-514
               

               
Cow position:
               
chr9:5501182-5500684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 60
               

               
Conread position:
               
3-514
               

               
Cow position:
               
chr9:11299366-11299853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr9:34000282-34000569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr9:29330320-29330646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
4-367
               

               
Cow position:
               
chr9:31811330-31811684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
74, 137
               

               
Conread position:
               
4-514
               

               
Cow position:
               
chr9:34287119-34286618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chr9:53109851-53109646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
6-461
               

               
Cow position:
               
chr9:59386453-59386886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 7
               

               
Conread position:
               
7-332
               

               
Cow position:
               
chr9:20739030-20738707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
38, 135
               

               
Conread position:
               
7-364
               

               
Cow position:
               
chr9:22361340-22360989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
7-422
               

               
Cow position:
               
chr9:5319956-5319543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 135
               

               
Conread position:
               
7-439
               

               
Cow position:
               
chr9:56773406-56772980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 101
               

               
Conread position:
               
7-440
               

               
Cow position:
               
chr9:1950249-1949822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 106
               

               
Conread position:
               
7-504
               

               
Cow position:
               
chr9:7410109-7409607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 116
               

               
Conread position:
               
7-509
               

               
Cow position:
               
chr9:17740618-17741103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
7-510
               

               
Cow position:
               
chr9:6192135-6192633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
7-514
               

               
Cow position:
               
chr9:50976920-50977436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
8-239
               

               
Cow position:
               
chr9:22616945-22616719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
8-279
               

               
Cow position:
               
chr9:54997699-54997979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr9:49279777-49279487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
243, 70
               

               
Conread position:
               
8-326
               

               
Cow position:
               
chr9:18002626-18002937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
8-397
               

               
Cow position:
               
chr9:54610906-54611291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 45
               

               
Conread position:
               
8-430
               

               
Cow position:
               
chr9:7363361-7362941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 139
               

               
Conread position:
               
8-433
               

               
Cow position:
               
chr9:20416185-20416595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
8-442
               

               
Cow position:
               
chr9:54528841-54528415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 131
               

               
Conread position:
               
8-488
               

               
Cow position:
               
chr9:27697406-27697880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
8-493
               

               
Cow position:
               
chr9:26057126-26057588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 57
               

               
Conread position:
               
8-504
               

               
Cow position:
               
chr9:61739242-61738751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 131
               

               
Conread position:
               
8-511
               

               
Cow position:
               
chr9:20848263-20847769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 261
               

               
Conread position:
               
9-278
               

               
Cow position:
               
chr9:53602734-53602478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr9:23430822-23431219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
9-427
               

               
Cow position:
               
chr9:28948178-28947778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
9-512
               

               
Cow position:
               
chr9:9552410-9551910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
10-159
               

               
Cow position:
               
chr9:22456389-22456238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
68, 129
               

               
Conread position:
               
10-210
               

               
Cow position:
               
chr9:49544739-49544935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
10-219
               

               
Cow position:
               
chr9:17568461-17568256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
10-235
               

               
Cow position:
               
chr9:18139971-18140200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
64, 96
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr9:31662790-31662561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chr9:38184154-38184395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 132
               

               
Conread position:
               
10-245
               

               
Cow position:
               
chr9:7866389-7866151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
70, 80
               

               
Conread position:
               
10-272
               

               
Cow position:
               
chr9:35369204-35368942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
64, 112
               

               
Conread position:
               
10-275
               

               
Cow position:
               
chr9:31639994-31640268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
68, 129
               

               
Conread position:
               
10-278
               

               
Cow position:
               
chr9:5621707-5621981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
10-279
               

               
Cow position:
               
chr9:44467025-44467298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
10-336
               

               
Cow position:
               
chr9:29034704-29035029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
10-378
               

               
Cow position:
               
chr9:13181734-13182089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
10-379
               

               
Cow position:
               
chr9:40327226-40327585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
10-390
               

               
Cow position:
               
chr9:35904427-35904792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
10-391
               

               
Cow position:
               
chr9:25964500-25964881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
64, 129
               

               
Conread position:
               
10-391
               

               
Cow position:
               
chr9:35375745-35375378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 65
               

               
Conread position:
               
10-391
               

               
Cow position:
               
chr9:53257742-53258102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
61, 16
               

               
Conread position:
               
10-399
               

               
Cow position:
               
chr9:20989131-20989514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr9:214139-214529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
38, 71
               

               
Conread position:
               
10-427
               

               
Cow position:
               
chr9:13205246-13205650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
10-427
               

               
Cow position:
               
chr9:39681682-39681255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 101
               

               
Conread position:
               
10-435
               

               
Cow position:
               
chr9:64155532-64155943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 129
               

               
Conread position:
               
10-436
               

               
Cow position:
               
chr9:5246169-5245760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 20
               

               
Conread position:
               
10-440
               

               
Cow position:
               
chr9:17410865-17411290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 68
               

               
Conread position:
               
10-447
               

               
Cow position:
               
chr9:36445945-36445510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 99
               

               
Conread position:
               
10-451
               

               
Cow position:
               
chr9:4646010-4646437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
10-488
               

               
Cow position:
               
chr9:29006884-29006405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 115
               

               
Conread position:
               
10-492
               

               
Cow position:
               
chr9:34957728-34958210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 128
               

               
Conread position:
               
10-504
               

               
Cow position:
               
chr9:31347277-31346780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 128
               

               
Conread position:
               
10-505
               

               
Cow position:
               
chr9:21459831-21460324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
10-509
               

               
Cow position:
               
chr9:42498153-42497653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
10-511
               

               
Cow position:
               
chr9:41416674-41416152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 130
               

               
Conread position:
               
10-512
               

               
Cow position:
               
chr9:47905956-47906463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 119
               

               
Conread position:
               
10-513
               

               
Cow position:
               
chr9:30402096-30402608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
10-513
               

               
Cow position:
               
chr9:52484597-52485092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 46
               

               
Conread position:
               
11-194
               

               
Cow position:
               
chr9:5340955-5340773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 112
               

               
Conread position:
               
11-267
               

               
Cow position:
               
chr9:8612624-8612346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
11-269
               

               
Cow position:
               
chr9:5393373-5393111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 127
               

               
Conread position:
               
11-279
               

               
Cow position:
               
chr9:48343921-48343654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
135, 10
               

               
Conread position:
               
11-434
               

               
Cow position:
               
chr9:6880091-6879688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 28
               

               
Conread position:
               
11-508
               

               
Cow position:
               
chr9:5226842-5227334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 130
               

               
Conread position:
               
12-265
               

               
Cow position:
               
chr9:42585304-42585564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
58, 101
               

               
Conread position:
               
12-277
               

               
Cow position:
               
chr9:11317797-11317527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
115, 111
               

               
Conread position:
               
12-278
               

               
Cow position:
               
chr9:1984198-1984473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
21, 99
               

               
Conread position:
               
12-279
               

               
Cow position:
               
chr9:3724740-3725008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
111, 126
               

               
Conread position:
               
12-323
               

               
Cow position:
               
chr9:21840396-21840092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
12-427
               

               
Cow position:
               
chr9:5218858-5219256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 110
               

               
Conread position:
               
12-440
               

               
Cow position:
               
chr9:824277-823865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
12-470
               

               
Cow position:
               
chr9:43871294-43870852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 111
               

               
Conread position:
               
12-499
               

               
Cow position:
               
chr9:16300246-16300739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
12-508
               

               
Cow position:
               
chr9:50606631-50607104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
69, 134
               

               
Conread position:
               
12-509
               

               
Cow position:
               
chr9:15215353-15215866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 118
               

               
Conread position:
               
13-244
               

               
Cow position:
               
chr9:5161753-5161975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
13-273
               

               
Cow position:
               
chr9:4284949-4285205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 114
               

               
Conread position:
               
13-277
               

               
Cow position:
               
chr9:30664461-30664729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr9:21888490-21888073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 126
               

               
Conread position:
               
14-437
               

               
Cow position:
               
chr9:3070105-3070502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
16-284
               

               
Cow position:
               
chr9:20810749-20811014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
108, 16
               

               
Conread position:
               
16-284
               

               
Cow position:
               
chr9:44579391-44579125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
152, 158
               

               
Conread position:
               
16-437
               

               
Cow position:
               
chr9:50080728-50081134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 107
               

               
Conread position:
               
16-511
               

               
Cow position:
               
chr9:52407488-52406992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 123
               

               
Conread position:
               
16-514
               

               
Cow position:
               
chr9:28983502-28983020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 110
               

               
Conread position:
               
17-381
               

               
Cow position:
               
chr9:6089420-6089050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 115
               

               
Conread position:
               
18-426
               

               
Cow position:
               
chr9:45756672-45756280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
18-438
               

               
Cow position:
               
chr9:7634584-7634176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 108
               

               
Conread position:
               
18-509
               

               
Cow position:
               
chr9:26344669-26345137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
393, 105
               

               
Conread position:
               
18-512
               

               
Cow position:
               
chr9:22151772-22152262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 123
               

               
Conread position:
               
18-514
               

               
Cow position:
               
chr9:54681817-54681341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
19-506
               

               
Cow position:
               
chr9:55256235-55256721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 92
               

               
Conread position:
               
21-377
               

               
Cow position:
               
chr9:5531915-5531565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
106, 102
               

               
Conread position:
               
21-396
               

               
Cow position:
               
chr9:22114319-22114688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 254
               

               
Conread position:
               
22-239
               

               
Cow position:
               
chr9:1350134-1350352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
123, 100
               

               
Conread position:
               
22-415
               

               
Cow position:
               
chr9:24873158-24872764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
59, 28
               

               
Conread position:
               
22-510
               

               
Cow position:
               
chr9:36490583-36491080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
24-349
               

               
Cow position:
               
chr9:16538491-16538820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 171
               

               
Conread position:
               
24-434
               

               
Cow position:
               
chr9:62357221-62357619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
25-276
               

               
Cow position:
               
chr9:20318769-20319024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
25-447
               

               
Cow position:
               
chr9:18343032-18342627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
12, 61
               

               
Conread position:
               
25-511
               

               
Cow position:
               
chr9:34374621-34375103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
26-505
               

               
Cow position:
               
chr9:45285223-45285710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
28-269
               

               
Cow position:
               
chr9:25933191-25933428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 124
               

               
Conread position:
               
28-492
               

               
Cow position:
               
chr9:10011108-10010654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
31-508
               

               
Cow position:
               
chr9:8724104-8723620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 198
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr9:36067207-36066961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
95, 91
               

               
Conread position:
               
32-419
               

               
Cow position:
               
chr9:34689309-34689673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
5, 81
               

               
Conread position:
               
32-437
               

               
Cow position:
               
chr9:17310257-17310654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 109
               

               
Conread position:
               
32-507
               

               
Cow position:
               
chr9:56453639-56453173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 112
               

               
Conread position:
               
32-510
               

               
Cow position:
               
chr9:43037786-43037325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
5, 93
               

               
Conread position:
               
34-429
               

               
Cow position:
               
chr9:32371460-32371837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
34-435
               

               
Cow position:
               
chr9:54716326-54716694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
122, 42
               

               
Conread position:
               
34-439
               

               
Cow position:
               
chr9:60110534-60110154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
35-509
               

               
Cow position:
               
chr9:35708323-35708775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
36-505
               

               
Cow position:
               
chr9:50544335-50544788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
37-186
               

               
Cow position:
               
chr9:36844128-36843983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 101
               

               
Conread position:
               
37-210
               

               
Cow position:
               
chr9:34400335-34400158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
37-243
               

               
Cow position:
               
chr9:2977678-2977472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 86
               

               
Conread position:
               
37-260
               

               
Cow position:
               
chr9:8740818-8740587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 108
               

               
Conread position:
               
37-295
               

               
Cow position:
               
chr9:18072821-18073076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
37-366
               

               
Cow position:
               
chr9:35533655-35533976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 135
               

               
Conread position:
               
37-440
               

               
Cow position:
               
chr9:55084000-55084398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
37-440
               

               
Cow position:
               
chr9:58133727-58134117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
37-469
               

               
Cow position:
               
chr9:41513918-41513504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
37-505
               

               
Cow position:
               
chr9:44710118-44709662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 60
               

               
Conread position:
               
37-507
               

               
Cow position:
               
chr9:32306943-32307407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 41
               

               
Conread position:
               
38-278
               

               
Cow position:
               
chr9:52724920-52725161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
38-437
               

               
Cow position:
               
chr9:19068093-19067688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
86, 100
               

               
Conread position:
               
38-505
               

               
Cow position:
               
chr9:34901823-34902269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
38-508
               

               
Cow position:
               
chr9:30020273-30019828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 13
               

               
Conread position:
               
38-510
               

               
Cow position:
               
chr9:45141322-45141772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
131, 37
               

               
Conread position:
               
38-514
               

               
Cow position:
               
chr9:30138421-30137943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 84
               

               
Conread position:
               
41-236
               

               
Cow position:
               
chr9:38385576-38385777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
41-250
               

               
Cow position:
               
chr9:26310851-26310634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
41-376
               

               
Cow position:
               
chr9:35850191-35849871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 97
               

               
Conread position:
               
41-512
               

               
Cow position:
               
chr9:5327544-5327084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 34
               

               
Conread position:
               
43-240
               

               
Cow position:
               
chr9:35101158-35100961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
43-268
               

               
Cow position:
               
chr9:40542404-40542184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
43-467
               

               
Cow position:
               
chr9:29825320-29824906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
81, 48
               

               
Conread position:
               
43-496
               

               
Cow position:
               
chr9:5836455-5835988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 102
               

               
Conread position:
               
43-504
               

               
Cow position:
               
chr9:34468302-34468728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
43-513
               

               
Cow position:
               
chr9:20091329-20090881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
44-278
               

               
Cow position:
               
chr9:27052043-27052283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
35, 80
               

               
Conread position:
               
44-278
               

               
Cow position:
               
chr9:49404044-49403810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
44-435
               

               
Cow position:
               
chr9:8338320-8337935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
44-451
               

               
Cow position:
               
chr9:9416117-9416511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
44-492
               

               
Cow position:
               
chr9:52578243-52578696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
44-498
               

               
Cow position:
               
chr9:9405765-9406204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
44-508
               

               
Cow position:
               
chr9:4861679-4861222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 40
               

               
Conread position:
               
44-509
               

               
Cow position:
               
chr9:49764946-49764470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
44-512
               

               
Cow position:
               
chr9:19382610-19382172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
413, 12
               

               
Conread position:
               
44-514
               

               
Cow position:
               
chr9:20579336-20579768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
386, 31
               

               
Conread position:
               
44-514
               

               
Cow position:
               
chr9:26278887-26279353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 20
               

               
Conread position:
               
44-514
               

               
Cow position:
               
chr9:33668998-33668564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr9:41782184-41781944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 110
               

               
Conread position:
               
45-513
               

               
Cow position:
               
chr9:43912218-43911773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
35, 141
               

               
Conread position:
               
46-268
               

               
Cow position:
               
chr9:5400003-5399791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
46-275
               

               
Cow position:
               
chr9:60037943-60037711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
46-437
               

               
Cow position:
               
chr9:33940895-33940512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
46-514
               

               
Cow position:
               
chr9:17871820-17872287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 76
               

               
Conread position:
               
47-400
               

               
Cow position:
               
chr9:9823232-9823563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
47-469
               

               
Cow position:
               
chr9:8288904-8288491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
47-510
               

               
Cow position:
               
chr9:13670924-13670460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
47-512
               

               
Cow position:
               
chr9:4630389-4629931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
48-230
               

               
Cow position:
               
chr9:9624742-9624927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
48-467
               

               
Cow position:
               
chr9:10144186-10144595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 91
               

               
Conread position:
               
48-467
               

               
Cow position:
               
chr9:11319358-11319757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
48-508
               

               
Cow position:
               
chr9:59013049-59013512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
49-437
               

               
Cow position:
               
chr9:51205006-51204638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
49-512
               

               
Cow position:
               
chr9:31626434-31625952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
50-278
               

               
Cow position:
               
chr9:61846866-61847097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
50-415
               

               
Cow position:
               
chr9:44914812-44915169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 73
               

               
Conread position:
               
50-488
               

               
Cow position:
               
chr9:24997232-24997657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
51-274
               

               
Cow position:
               
chr9:35305837-35306061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
51-502
               

               
Cow position:
               
chr9:26086350-26085889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 225
               

               
Conread position:
               
52-434
               

               
Cow position:
               
chr9:29684427-29684054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 24
               

               
Conread position:
               
52-440
               

               
Cow position:
               
chr9:10877584-10877985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 87
               

               
Conread position:
               
52-507
               

               
Cow position:
               
chr9:41283310-41282838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
52-508
               

               
Cow position:
               
chr9:52001289-52000822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
53-268
               

               
Cow position:
               
chr9:37069288-37069507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
53-279
               

               
Cow position:
               
chr9:16182210-16182435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
115, 69
               

               
Conread position:
               
53-334
               

               
Cow position:
               
chr9:1712207-1712467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
53-347
               

               
Cow position:
               
chr9:5532233-5531938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
80, 85
               

               
Conread position:
               
53-371
               

               
Cow position:
               
chr9:6225166-6225482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
53-504
               

               
Cow position:
               
chr9:51566207-51566668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
53-507
               

               
Cow position:
               
chr9:1751616-1751156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
53-514
               

               
Cow position:
               
chr9:5756722-5757157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
54-267
               

               
Cow position:
               
chr9:58204943-58204729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
54-278
               

               
Cow position:
               
chr9:27076971-27077191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
26, 66
               

               
Conread position:
               
54-400
               

               
Cow position:
               
chr9:17929053-17928700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 230
               

               
Conread position:
               
54-464
               

               
Cow position:
               
chr9:28354813-28354394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 192
               

               
Conread position:
               
54-490
               

               
Cow position:
               
chr9:55287611-55288045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 88
               

               
Conread position:
               
54-508
               

               
Cow position:
               
chr9:24887477-24887031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 29
               

               
Conread position:
               
55-280
               

               
Cow position:
               
chr9:30749306-30749535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
55-416
               

               
Cow position:
               
chr9:32625274-32624935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
196, 5
               

               
Conread position:
               
55-421
               

               
Cow position:
               
chr9:44108551-44108911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
55-472
               

               
Cow position:
               
chr9:8563120-8562694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 306
               

               
Conread position:
               
57-279
               

               
Cow position:
               
chr9:26828544-26828767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
58-276
               

               
Cow position:
               
chr9:4128507-4128728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
58-440
               

               
Cow position:
               
chr9:64559610-64559979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
58-499
               

               
Cow position:
               
chr9:19637363-19637784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
69, 65
               

               
Conread position:
               
58-509
               

               
Cow position:
               
chr9:5209855-5209427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
59-213
               

               
Cow position:
               
chr9:20465438-20465596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
59-278
               

               
Cow position:
               
chr9:40105751-40105518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
60-514
               

               
Cow position:
               
chr9:9402911-9403351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
61-513
               

               
Cow position:
               
chr9:51620708-51620265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 61
               

               
Conread position:
               
62-501
               

               
Cow position:
               
chr9:55118350-55117915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 44
               

               
Conread position:
               
62-513
               

               
Cow position:
               
chr9:47869278-47868845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 76
               

               
Conread position:
               
62-514
               

               
Cow position:
               
chr9:23043047-23042619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
63-391
               

               
Cow position:
               
chr9:22638370-22638054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
93, 86
               

               
Conread position:
               
63-514
               

               
Cow position:
               
chr9:41789549-41789123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
64-278
               

               
Cow position:
               
chr9:34742460-34742668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 12
               

               
Conread position:
               
65-277
               

               
Cow position:
               
chr9:41653058-41652841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
66-372
               

               
Cow position:
               
chr9:36827392-36827106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
66-427
               

               
Cow position:
               
chr9:31814111-31814470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 56
               

               
Conread position:
               
67-272
               

               
Cow position:
               
chr9:34918999-34919203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
5, 53
               

               
Conread position:
               
67-510
               

               
Cow position:
               
chr9:9595686-9596126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 76
               

               
Conread position:
               
69-266
               

               
Cow position:
               
chr9:23541154-23541342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
182, 53
               

               
Conread position:
               
69-267
               

               
Cow position:
               
chr9:26555942-26556139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
146, 50
               

               
Conread position:
               
69-338
               

               
Cow position:
               
chr9:41995978-41995701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
69-355
               

               
Cow position:
               
chr9:49983428-49983702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
177, 94
               

               
Conread position:
               
69-357
               

               
Cow position:
               
chr9:29108801-29108523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 42
               

               
Conread position:
               
69-439
               

               
Cow position:
               
chr9:33598245-33597890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
69-490
               

               
Cow position:
               
chr9:8546582-8546185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
69-496
               

               
Cow position:
               
chr9:11068205-11068632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
94, 53
               

               
Conread position:
               
71-440
               

               
Cow position:
               
chr9:38846087-38846429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
75-492
               

               
Cow position:
               
chr9:33119624-33120046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 199
               

               
Conread position:
               
79-264
               

               
Cow position:
               
chr9:38875320-38875509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
67, 43
               

               
Conread position:
               
79-400
               

               
Cow position:
               
chr9:39577988-39577682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
79-440
               

               
Cow position:
               
chr9:3782617-3782273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
79-510
               

               
Cow position:
               
chr9:58979655-58979229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
84-508
               

               
Cow position:
               
chr9:18216851-18217264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 167
               

               
Conread position:
               
85-514
               

               
Cow position:
               
chr9:61544897-61544483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 53
               

               
Conread position:
               
88-506
               

               
Cow position:
               
chr9:43757768-43757373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
236, 34
               

               
Conread position:
               
88-508
               

               
Cow position:
               
chr9:388770-389171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
109, 35
               

               
Conread position:
               
89-267
               

               
Cow position:
               
chr9:51005131-51004958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
89-419
               

               
Cow position:
               
chr9:766906-767225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
89-439
               

               
Cow position:
               
chr9:1729432-1729770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
89-489
               

               
Cow position:
               
chr9:29092048-29091615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
90-268
               

               
Cow position:
               
chr9:40604193-40604008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
90-511
               

               
Cow position:
               
chr9:6840254-6839814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
94-509
               

               
Cow position:
               
chr9:15006512-15006903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
95-469
               

               
Cow position:
               
chr9:56011735-56011370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
98-447
               

               
Cow position:
               
chr9:15225055-15225403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
100-504
               

               
Cow position:
               
chr9:46981000-46981392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 9
               

               
Conread position:
               
102-278
               

               
Cow position:
               
chr9:32711163-32710980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
102-355
               

               
Cow position:
               
chr9:33038227-33038473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
106-505
               

               
Cow position:
               
chr9:53762928-53762528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
110-511
               

               
Cow position:
               
chr9:42062339-42061915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
58, 130
               

               
Conread position:
               
115-440
               

               
Cow position:
               
chr9:11313289-11313611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
115-513
               

               
Cow position:
               
chr9:17799848-17799456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
123-317
               

               
Cow position:
               
chr9:50667638-50667447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
123-433
               

               
Cow position:
               
chr9:43444009-43443714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
123-440
               

               
Cow position:
               
chr9:1973156-1972851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
22, 153
               

               
Conread position:
               
123-501
               

               
Cow position:
               
chr9:64106121-64105736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
45, 152
               

               
Conread position:
               
123-508
               

               
Cow position:
               
chr9:61303216-61302829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
123-513
               

               
Cow position:
               
chr9:30477570-30477951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 120
               

               
Conread position:
               
123-514
               

               
Cow position:
               
chr9:11123278-11123660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
123-514
               

               
Cow position:
               
chr9:52131235-52130831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
45, 177
               

               
Conread position:
               
124-277
               

               
Cow position:
               
chr9:1879589-1879435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
41, 128
               

               
Conread position:
               
124-509
               

               
Cow position:
               
chr9:48628244-48627848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
125-440
               

               
Cow position:
               
chr9:30652496-30652806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
128-514
               

               
Cow position:
               
chr9:27279518-27279126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
131-423
               

               
Cow position:
               
chr9:49417193-49416907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 148
               

               
Conread position:
               
132-415
               

               
Cow position:
               
chr9:19493259-19493538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
36, 5
               

               
Conread position:
               
134-427
               

               
Cow position:
               
chr9:55321832-55321553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
134-495
               

               
Cow position:
               
chr9:9815616-9815252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 140
               

               
Conread position:
               
137-343
               

               
Cow position:
               
chr9:8525036-8524828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 161
               

               
Conread position:
               
137-378
               

               
Cow position:
               
chr9:26440600-26440847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 152
               

               
Conread position:
               
137-419
               

               
Cow position:
               
chr9:60027391-60027121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
137-439
               

               
Cow position:
               
chr9:3738022-3738320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 136
               

               
Conread position:
               
137-440
               

               
Cow position:
               
chr9:9654113-9654404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 6
               

               
Conread position:
               
137-496
               

               
Cow position:
               
chr9:12225787-12226147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
137-514
               

               
Cow position:
               
chr9:39011260-39011647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
139-440
               

               
Cow position:
               
chr9:62668450-62668153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
141-493
               

               
Cow position:
               
chr9:31557538-31557889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
141-510
               

               
Cow position:
               
chr9:41728453-41728084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
142-492
               

               
Cow position:
               
chr9:21080751-21080415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
142-513
               

               
Cow position:
               
chr9:32115416-32115760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
144-412
               

               
Cow position:
               
chr9:11364084-11363828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
146-284
               

               
Cow position:
               
chr9:62151292-62151153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 78
               

               
Conread position:
               
146-505
               

               
Cow position:
               
chr9:28451967-28452340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 120
               

               
Conread position:
               
146-514
               

               
Cow position:
               
chr9:31216274-31215899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
146-514
               

               
Cow position:
               
chr9:51720714-51721067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 132
               

               
Conread position:
               
148-501
               

               
Cow position:
               
chr9:30124109-30123763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 117
               

               
Conread position:
               
148-506
               

               
Cow position:
               
chr9:19555563-19555217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
20, 119
               

               
Conread position:
               
148-514
               

               
Cow position:
               
chr9:1371121-1370755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
63, 107
               

               
Conread position:
               
150-514
               

               
Cow position:
               
chr9:56065735-56065386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
158-439
               

               
Cow position:
               
chr9:49292970-49293237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 104
               

               
Conread position:
               
160-511
               

               
Cow position:
               
chr9:26477390-26477034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
162-511
               

               
Cow position:
               
chr9:12281142-12280795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
6, 62
               

               
Conread position:
               
165-427
               

               
Cow position:
               
chr9:31638472-31638740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
27, 109
               

               
Conread position:
               
165-437
               

               
Cow position:
               
chr9:50543255-50543521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
165-503
               

               
Cow position:
               
chr9:60394882-60395218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
90, 119
               

               
Conread position:
               
165-506
               

               
Cow position:
               
chr9:25557134-25556811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
312, 56
               

               
Conread position:
               
165-508
               

               
Cow position:
               
chr9:50202738-50202380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
87, 107
               

               
Conread position:
               
165-510
               

               
Cow position:
               
chr9:6851899-6852227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
32, 109
               

               
Conread position:
               
165-511
               

               
Cow position:
               
chr9:8901055-8901407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
165-512
               

               
Cow position:
               
chr9:11168899-11168567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 108
               

               
Conread position:
               
165-513
               

               
Cow position:
               
chr9:5263669-5263325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
86, 43
               

               
Conread position:
               
165-514
               

               
Cow position:
               
chr9:5456005-5456352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
166-514
               

               
Cow position:
               
chr9:20897069-20896739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
167-383
               

               
Cow position:
               
chr9:41853609-41853393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 127
               

               
Conread position:
               
167-427
               

               
Cow position:
               
chr9:34106889-34106630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 96
               

               
Conread position:
               
167-514
               

               
Cow position:
               
chr9:40215410-40215067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
170-439
               

               
Cow position:
               
chr9:17518325-17518585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
18, 107
               

               
Conread position:
               
171-320
               

               
Cow position:
               
chr9:18029231-18029380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 102
               

               
Conread position:
               
174-430
               

               
Cow position:
               
chr9:11303918-11304162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr9:33114501-33114164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
179-438
               

               
Cow position:
               
chr9:42478311-42478577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
183-427
               

               
Cow position:
               
chr9:10819683-10819912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
188-454
               

               
Cow position:
               
chr9:6596089-6596343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
67, 95
               

               
Conread position:
               
188-510
               

               
Cow position:
               
chr9:1867595-1867295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
63, 90
               

               
Conread position:
               
189-439
               

               
Cow position:
               
chr9:35105646-35105886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 23
               

               
Conread position:
               
189-461
               

               
Cow position:
               
chr9:28686536-28686270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr9:4262948-4263263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
63, 82
               

               
Conread position:
               
189-514
               

               
Cow position:
               
chr9:34284092-34283780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 63
               

               
Conread position:
               
192-507
               

               
Cow position:
               
chr9:5399279-5398981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 81
               

               
Conread position:
               
192-513
               

               
Cow position:
               
chr9:60081047-60080714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
59, 74
               

               
Conread position:
               
193-492
               

               
Cow position:
               
chr9:55438284-55438590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 67
               

               
Conread position:
               
195-381
               

               
Cow position:
               
chr9:43013862-43013684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
195-429
               

               
Cow position:
               
chr9:41486102-41486329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 70
               

               
Conread position:
               
195-436
               

               
Cow position:
               
chr9:52839748-52839972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 69
               

               
Conread position:
               
195-505
               

               
Cow position:
               
chr9:18426055-18425736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
195-512
               

               
Cow position:
               
chr9:40507466-40507771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
196-440
               

               
Cow position:
               
chr9:52513315-52513545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
196-505
               

               
Cow position:
               
chr9:34410258-34410564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 69
               

               
Conread position:
               
197-508
               

               
Cow position:
               
chr9:31359737-31359430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 67
               

               
Conread position:
               
197-510
               

               
Cow position:
               
chr9:40005612-40005306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
55, 82
               

               
Conread position:
               
197-514
               

               
Cow position:
               
chr9:6189235-6189543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
198-439
               

               
Cow position:
               
chr9:53326615-53326848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
198-504
               

               
Cow position:
               
chr9:13743797-13744104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
228, 62
               

               
Conread position:
               
199-509
               

               
Cow position:
               
chr9:54493276-54492963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
205-486
               

               
Cow position:
               
chr9:53430991-53431274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
208-445
               

               
Cow position:
               
chr9:52598598-52598823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 64
               

               
Conread position:
               
212-510
               

               
Cow position:
               
chr9:1877886-1878174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
213-511
               

               
Cow position:
               
chr9:9311980-9311681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
213-512
               

               
Cow position:
               
chr9:33584562-33584862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
216-432
               

               
Cow position:
               
chr9:3343861-3343660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
217-511
               

               
Cow position:
               
chr9:38941315-38941614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
219-508
               

               
Cow position:
               
chr9:52518702-52518995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
125, 71
               

               
Conread position:
               
220-447
               

               
Cow position:
               
chr9:26310622-26310401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
222-439
               

               
Cow position:
               
chr9:64064249-64064459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
222-440
               

               
Cow position:
               
chr9:38645231-38645441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
223-436
               

               
Cow position:
               
chr9:28379080-28378875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
224-433
               

               
Cow position:
               
chr9:28754929-28754729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
224-507
               

               
Cow position:
               
chr9:41785330-41785048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
225-419
               

               
Cow position:
               
chr9:32981963-32982151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
226-446
               

               
Cow position:
               
chr9:55532922-55532718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
226-509
               

               
Cow position:
               
chr9:45171111-45171398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
235-439
               

               
Cow position:
               
chr9:41781752-41781558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
236-492
               

               
Cow position:
               
chr9:25400099-25400345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
238-514
               

               
Cow position:
               
chr9:34278959-34279239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
239-439
               

               
Cow position:
               
chr9:23797331-23797139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
190, 31
               

               
Conread position:
               
250-432
               

               
Cow position:
               
chr9:24652493-24652315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
250-441
               

               
Cow position:
               
chr9:1350136-1349952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
257-506
               

               
Cow position:
               
chr9:12337983-12337728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
177, 14
               

               
Conread position:
               
267-514
               

               
Cow position:
               
chr9:50382253-50382498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
268-508
               

               
Cow position:
               
chr9:33838239-33838484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
133, 24
               

               
Conread position:
               
271-504
               

               
Cow position:
               
chr9:58452008-58452240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
157, 23
               

               
Conread position:
               
271-514
               

               
Cow position:
               
chr9:34024770-34024519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
157, 21
               

               
Conread position:
               
272-513
               

               
Cow position:
               
chr9:8628848-8629091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
166, 20
               

               
Conread position:
               
274-514
               

               
Cow position:
               
chr9:39315915-39315683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
203, 18
               

               
Conread position:
               
275-440
               

               
Cow position:
               
chr9:9686343-9686509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr9:23955913-23956147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
277-500
               

               
Cow position:
               
chr9:23970831-23971059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
277-507
               

               
Cow position:
               
chr9:12786408-12786649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
278-472
               

               
Cow position:
               
chr9:58368933-58369129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
151, 14
               

               
Conread position:
               
280-512
               

               
Cow position:
               
chr9:28156756-28156522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
281-492
               

               
Cow position:
               
chr9:41964674-41964890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
148, 11
               

               
Conread position:
               
281-492
               

               
Cow position:
               
chr9:55529856-55529645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
281-501
               

               
Cow position:
               
chr9:4580343-4580551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
283-424
               

               
Cow position:
               
chr9:26859407-26859274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
283-440
               

               
Cow position:
               
chr9:43342389-43342234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
283-447
               

               
Cow position:
               
chr9:34888238-34888400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 40
               

               
Conread position:
               
283-511
               

               
Cow position:
               
chr9:4341100-4341333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
146, 9
               

               
Conread position:
               
283-511
               

               
Cow position:
               
chr9:43159811-43159578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
283-512
               

               
Cow position:
               
chr9:24429037-24429255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
283-514
               

               
Cow position:
               
chr9:33347431-33347661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
192, 9
               

               
Conread position:
               
283-514
               

               
Cow position:
               
chr9:50310707-50310943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
145, 9
               

               
Conread position:
               
288-475
               

               
Cow position:
               
chr9:20637427-20637236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 13
               

               
Conread position:
               
292-440
               

               
Cow position:
               
chr9:6293646-6293497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
292-504
               

               
Cow position:
               
chr9:44584644-44584431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
185, 131
               

               
Conread position:
               
292-506
               

               
Cow position:
               
chr9:34484646-34484419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
136, 217
               

               
Conread position:
               
292-506
               

               
Cow position:
               
chr9:56827532-56827303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
45, 195
               

               
Conread position:
               
292-507
               

               
Cow position:
               
chr9:21383899-21384114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
292-508
               

               
Cow position:
               
chr9:33101071-33101279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
185, 15
               

               
Conread position:
               
292-508
               

               
Cow position:
               
chr9:39135577-39135794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
75, 134
               

               
Conread position:
               
292-509
               

               
Cow position:
               
chr9:29819769-29819551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 101
               

               
Conread position:
               
292-509
               

               
Cow position:
               
chr9:33151793-33151574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
292-509
               

               
Cow position:
               
chr9:37199178-37198952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
292-509
               

               
Cow position:
               
chr9:58662290-58662068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 52
               

               
Conread position:
               
292-509
               

               
Cow position:
               
chr9:63361668-63361886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
180, 140
               

               
Conread position:
               
292-510
               

               
Cow position:
               
chr9:7805910-7806130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
292-514
               

               
Cow position:
               
chr9:14738300-14738072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
292-514
               

               
Cow position:
               
chr9:26102774-26102551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
90, 47
               

               
Conread position:
               
292-514
               

               
Cow position:
               
chr9:38289275-38289490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
121, 52
               

               
Conread position:
               
293-493
               

               
Cow position:
               
chr9:39758568-39758371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
293-504
               

               
Cow position:
               
chr9:47214495-47214720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
293-509
               

               
Cow position:
               
chr9:25375686-25375909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 75
               

               
Conread position:
               
293-510
               

               
Cow position:
               
chr9:13742573-13742362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
186, 136
               

               
Conread position:
               
293-511
               

               
Cow position:
               
chr9:5342198-5342422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
136, 65
               

               
Conread position:
               
293-514
               

               
Cow position:
               
chr9:21292357-21292588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
296-432
               

               
Cow position:
               
chr9:34014202-34014338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
296-475
               

               
Cow position:
               
chr9:3353402-3353228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
146, 46
               

               
Conread position:
               
296-500
               

               
Cow position:
               
chr9:39149126-39148916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
296-504
               

               
Cow position:
               
chr9:27345537-27345759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
127, 117
               

               
Conread position:
               
296-506
               

               
Cow position:
               
chr9:27347843-27347646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
177, 31
               

               
Conread position:
               
296-511
               

               
Cow position:
               
chr9:41644703-41644931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
116, 111
               

               
Conread position:
               
296-514
               

               
Cow position:
               
chr9:11030231-11030009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 64
               

               
Conread position:
               
296-514
               

               
Cow position:
               
chr9:42586509-42586727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
179, 133
               

               
Conread position:
               
297-440
               

               
Cow position:
               
chr9:24243675-24243820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
297-461
               

               
Cow position:
               
chr9:46664873-46664707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
297-511
               

               
Cow position:
               
chr9:36628164-36627945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
139, 113
               

               
Conread position:
               
298-440
               

               
Cow position:
               
chr9:54051819-54051680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
298-490
               

               
Cow position:
               
chr9:34973667-34973856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
176, 131
               

               
Conread position:
               
298-498
               

               
Cow position:
               
chr9:60355167-60355364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
116, 133
               

               
Conread position:
               
299-510
               

               
Cow position:
               
chr9:58131909-58132124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
117, 95
               

               
Conread position:
               
300-511
               

               
Cow position:
               
chr9:32089432-32089215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
300-513
               

               
Cow position:
               
chr9:36458044-36457817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
301-440
               

               
Cow position:
               
chr9:55354653-55354514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-506
               

               
Cow position:
               
chr9:11098414-11098623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
301-511
               

               
Cow position:
               
chr9:9460023-9459812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
302-514
               

               
Cow position:
               
chr9:3847444-3847215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
303-514
               

               
Cow position:
               
chr9:34034295-34034090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
103, 49
               

               
Conread position:
               
306-440
               

               
Cow position:
               
chr9:52807368-52807502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
119, 19
               

               
Conread position:
               
311-438
               

               
Cow position:
               
chr9:35793709-35793582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
311-508
               

               
Cow position:
               
chr9:62631639-62631841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
313-503
               

               
Cow position:
               
chr9:34707282-34707479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
108, 62
               

               
Conread position:
               
314-509
               

               
Cow position:
               
chr9:36634535-36634329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
314-510
               

               
Cow position:
               
chr9:22803942-22804145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
54, 106
               

               
Conread position:
               
314-514
               

               
Cow position:
               
chr9:34135745-34135549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
148, 96
               

               
Conread position:
               
315-505
               

               
Cow position:
               
chr9:48809164-48808976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
162, 11
               

               
Conread position:
               
315-514
               

               
Cow position:
               
chr9:43202363-43202168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
5, 128
               

               
Conread position:
               
316-510
               

               
Cow position:
               
chr9:32812204-32812012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
319-504
               

               
Cow position:
               
chr9:12773714-12773524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
109, 83
               

               
Conread position:
               
319-505
               

               
Cow position:
               
chr9:19718316-19718505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
319-510
               

               
Cow position:
               
chr9:7543235-7543433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 166
               

               
Conread position:
               
320-513
               

               
Cow position:
               
chr9:22447271-22447473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
321-514
               

               
Cow position:
               
chr9:4256965-4257157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
156, 102
               

               
Conread position:
               
322-475
               

               
Cow position:
               
chr9:35403604-35403447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
322-511
               

               
Cow position:
               
chr9:18003170-18003355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 54
               

               
Conread position:
               
322-514
               

               
Cow position:
               
chr9:35295711-35295514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
105, 127
               

               
Conread position:
               
323-508
               

               
Cow position:
               
chr9:36623904-36624102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
324-492
               

               
Cow position:
               
chr9:52998361-52998536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
111, 51
               

               
Conread position:
               
326-501
               

               
Cow position:
               
chr9:32773230-32773055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
327-440
               

               
Cow position:
               
chr9:45455091-45454979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
327-509
               

               
Cow position:
               
chr9:36401649-36401835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chr9:16115593-16115782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
330-512
               

               
Cow position:
               
chr9:35932801-35932993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
331-469
               

               
Cow position:
               
chr9:6392660-6392520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
331-504
               

               
Cow position:
               
chr9:40603680-40603497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
331-506
               

               
Cow position:
               
chr9:52648845-52649018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
144, 95
               

               
Conread position:
               
332-507
               

               
Cow position:
               
chr9:34917174-34917350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
141, 97
               

               
Conread position:
               
332-513
               

               
Cow position:
               
chr9:24079313-24079126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
340-505
               

               
Cow position:
               
chr9:61847121-61847286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
137, 89
               

               
Conread position:
               
341-512
               

               
Cow position:
               
chr9:48634898-48635062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
132, 88
               

               
Conread position:
               
341-514
               

               
Cow position:
               
chr9:26388210-26388036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
98, 61
               

               
Conread position:
               
342-507
               

               
Cow position:
               
chr9:3198186-3198353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 19
               

               
Conread position:
               
342-510
               

               
Cow position:
               
chr9:57642508-57642337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
345-511
               

               
Cow position:
               
chr9:20712834-20712661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
347-514
               

               
Cow position:
               
chr9:765993-765835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
347-514
               

               
Cow position:
               
chr9:14519384-14519555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
348-510
               

               
Cow position:
               
chr9:18439176-18439331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
129, 72
               

               
Conread position:
               
350-513
               

               
Cow position:
               
chr9:47928899-47928741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
127, 52
               

               
Conread position:
               
350-514
               

               
Cow position:
               
chr9:53323791-53323967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
351-501
               

               
Cow position:
               
chr9:29118472-29118321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
361-507
               

               
Cow position:
               
chr9:61434066-61434213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
116, 44
               

               
Conread position:
               
361-514
               

               
Cow position:
               
chr9:22360846-22360692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
70, 118
               

               
Conread position:
               
362-510
               

               
Cow position:
               
chr9:35847556-35847407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 130
               

               
Conread position:
               
368-514
               

               
Cow position:
               
chr9:22228396-22228542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
5, 40
               

               
Conread position:
               
381-511
               

               
Cow position:
               
chr9:55577670-55577534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 40
               
Show alignments to all cow chromosomes.