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Cow genome map

           
Conread name:
           
mE6-MI-P-E6-acx-c-02-1-UM.s1
        

               
Conread position:
               
1-166
               

               
Cow position:
               
chrX:22115560-22115393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chrX:36364943-36365131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chrX:21795218-21795420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
7, 154
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chrX:7382045-7382253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 155
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chrX:32978535-32978308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
7, 142
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chrX:42855133-42855365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:11581657-11581904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chrX:4123557-4123802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
11, 122
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chrX:38967374-38967628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:28847154-28846898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:33020208-33020467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 138
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chrX:35041944-35042217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chrX:9997609-9997341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chrX:15485903-15485632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chrX:34192403-34192667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 12
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chrX:14924722-14924999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chrX:40452491-40452213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 125
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chrX:46032996-46032721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chrX:21665869-21665595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 11
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chrX:26441058-26440778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 139
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:20751986-20752259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:35388185-35387900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:35609708-35609991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 139
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:45414578-45414299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 128
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chrX:11806295-11806012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
7, 139
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chrX:28157207-28157501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
11, 218
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chrX:38439195-38439508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 140
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chrX:17497818-17498130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:42462026-42461694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 141
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:42874700-42875033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 279
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:19015164-19015490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 132
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chrX:36778127-36778475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
11, 114
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chrX:6234713-6234379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chrX:30454900-30454540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 124
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chrX:37843442-37843803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chrX:22538232-22537855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chrX:18244711-18245076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 61
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chrX:20029969-20030344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
11, 126
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chrX:20945290-20945655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
7, 88
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chrX:39704426-39704802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
7, 57
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chrX:40180148-40179789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:2425400-2425028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:18897929-18897560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:20878041-20877669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 104
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:21227194-21227550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 117
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:21749737-21749372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 105
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:21785490-21785865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
76, 118
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:21833607-21833979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 124
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:22493729-22494101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 124
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:23264715-23264343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:29848909-29848543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 124
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:30143562-30143191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:32584091-32583719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:40544888-40544513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
7, 126
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:41103510-41103885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
7, 119
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chrX:34663137-34662746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
11, 138
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chrX:23564075-23563689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 271
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chrX:34454391-34454759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
8, 124
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chrX:1055666-1055277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chrX:11844516-11844137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:31949209-31948830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 120
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chrX:44835094-44834683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chrX:46723019-46722621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
7, 259
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chrX:48195319-48194922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
8, 139
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chrX:7571628-7572033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 124
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chrX:35273066-35273492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
7, 147
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chrX:42470215-42469813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chrX:46771250-46770825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
7, 125
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chrX:29289298-29289718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chrX:37232134-37232548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chrX:2786824-2786412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chrX:7695485-7695893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chrX:33639687-33640125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 129
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chrX:24424670-24424249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 160
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chrX:878646-878227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chrX:8796972-8797402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chrX:18695199-18694779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chrX:28866267-28865852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chrX:40269198-40269647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 283
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chrX:24288191-24287772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
1-492
               

               
Cow position:
               
chrX:8730801-8731310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
1-492
               

               
Cow position:
               
chrX:41192412-41192905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chrX:20887922-20887430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 118
               

               
Conread position:
               
1-496
               

               
Cow position:
               
chrX:31436202-31436689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 125
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:34238443-34238946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 128
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chrX:126513-126986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chrX:2300653-2301151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
11, 126
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chrX:21593008-21593520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 29
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chrX:34532253-34532739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 66
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chrX:14884242-14883727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 143
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chrX:16762494-16762998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chrX:31250113-31250620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
1-507
               

               
Cow position:
               
chrX:38218440-38218944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chrX:7351024-7351534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chrX:35268612-35269090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chrX:45430296-45429798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 124
               

               
Conread position:
               
1-510
               

               
Cow position:
               
chrX:8925428-8925914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
1-510
               

               
Cow position:
               
chrX:27446413-27446917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chrX:3654330-3654839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 28
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chrX:6413768-6414267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
8, 116
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chrX:15545619-15546117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chrX:20340169-20339659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 141
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chrX:31443099-31442604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 122
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chrX:34376679-34377174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 102
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chrX:34441725-34441217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chrX:41879209-41878701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chrX:6543978-6544481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 123
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chrX:7645980-7646474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chrX:25035664-25035145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chrX:34565022-34565521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chrX:37072128-37072622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 124
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chrX:41122794-41123281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 123
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chrX:42247454-42246944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chrX:38963834-38964334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chrX:43114895-43115386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chrX:161150-161638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chrX:1176252-1175752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chrX:4269345-4268832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chrX:35224024-35224515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chrX:7806101-7806345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
73, 102
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chrX:28105645-28105923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chrX:42171573-42171149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 29
               

               
Conread position:
               
2-501
               

               
Cow position:
               
chrX:1616328-1615833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 141
               

               
Conread position:
               
2-506
               

               
Cow position:
               
chrX:41238640-41238132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
2-508
               

               
Cow position:
               
chrX:40827024-40826517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
7, 118
               

               
Conread position:
               
2-510
               

               
Cow position:
               
chrX:35413353-35413828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 124
               

               
Conread position:
               
2-512
               

               
Cow position:
               
chrX:30543559-30543072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
2-513
               

               
Cow position:
               
chrX:12249524-12250052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 128
               

               
Conread position:
               
2-513
               

               
Cow position:
               
chrX:32309824-32310319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 80
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chrX:45089162-45089416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
37, 104
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chrX:41403685-41403972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
5, 148
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chrX:41410233-41410520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
5, 148
               

               
Conread position:
               
3-437
               

               
Cow position:
               
chrX:34401721-34402156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 121
               

               
Conread position:
               
3-512
               

               
Cow position:
               
chrX:11655803-11656314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 131
               

               
Conread position:
               
4-342
               

               
Cow position:
               
chrX:28845570-28845888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
35, 120
               

               
Conread position:
               
4-439
               

               
Cow position:
               
chrX:5872042-5872469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
4-475
               

               
Cow position:
               
chrX:8899750-8900216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 135
               

               
Conread position:
               
4-492
               

               
Cow position:
               
chrX:10831786-10831265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 203
               

               
Conread position:
               
4-505
               

               
Cow position:
               
chrX:31729184-31729667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 71
               

               
Conread position:
               
4-506
               

               
Cow position:
               
chrX:9252448-9251933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 37
               

               
Conread position:
               
4-508
               

               
Cow position:
               
chrX:5638442-5637947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
4-513
               

               
Cow position:
               
chrX:22482963-22482452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 135
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chrX:30921914-30922154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
73, 101
               

               
Conread position:
               
7-265
               

               
Cow position:
               
chrX:25848644-25848901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
7-278
               

               
Cow position:
               
chrX:15139813-15139542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
7-378
               

               
Cow position:
               
chrX:488219-488595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 104
               

               
Conread position:
               
7-440
               

               
Cow position:
               
chrX:34502652-34503073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 23
               

               
Conread position:
               
7-444
               

               
Cow position:
               
chrX:40557947-40557518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 116
               

               
Conread position:
               
7-446
               

               
Cow position:
               
chrX:47481527-47481955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
43, 133
               

               
Conread position:
               
7-466
               

               
Cow position:
               
chrX:27516262-27516700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
7-512
               

               
Cow position:
               
chrX:41733458-41732987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
7-514
               

               
Cow position:
               
chrX:31260902-31260387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
8-272
               

               
Cow position:
               
chrX:20582760-20583016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 115
               

               
Conread position:
               
8-275
               

               
Cow position:
               
chrX:7718586-7718855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 22
               

               
Conread position:
               
8-356
               

               
Cow position:
               
chrX:13785641-13785291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
8-440
               

               
Cow position:
               
chrX:17725708-17726129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 70
               

               
Conread position:
               
8-505
               

               
Cow position:
               
chrX:45501878-45502364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 131
               

               
Conread position:
               
8-506
               

               
Cow position:
               
chrX:151631-152135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 130
               

               
Conread position:
               
8-513
               

               
Cow position:
               
chrX:15007421-15006922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 115
               

               
Conread position:
               
9-431
               

               
Cow position:
               
chrX:30162728-30163149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
159, 100
               

               
Conread position:
               
9-457
               

               
Cow position:
               
chrX:5118751-5118327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
159, 21
               

               
Conread position:
               
9-508
               

               
Cow position:
               
chrX:45967893-45968369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
66, 115
               

               
Conread position:
               
9-509
               

               
Cow position:
               
chrX:15147455-15146966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 100
               

               
Conread position:
               
10-159
               

               
Cow position:
               
chrX:45420943-45420791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 131
               

               
Conread position:
               
10-176
               

               
Cow position:
               
chrX:33205260-33205097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
68, 114
               

               
Conread position:
               
10-179
               

               
Cow position:
               
chrX:5856591-5856422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
123, 56
               

               
Conread position:
               
10-186
               

               
Cow position:
               
chrX:31373306-31373473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
10-230
               

               
Cow position:
               
chrX:23061186-23061398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chrX:35937337-35937121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
10-268
               

               
Cow position:
               
chrX:12115773-12116038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
59, 38
               

               
Conread position:
               
10-284
               

               
Cow position:
               
chrX:17271557-17271276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
69, 129
               

               
Conread position:
               
10-305
               

               
Cow position:
               
chrX:34990773-34991061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
238, 112
               

               
Conread position:
               
10-349
               

               
Cow position:
               
chrX:25237910-25238239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
10-350
               

               
Cow position:
               
chrX:25232318-25232656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
22, 118
               

               
Conread position:
               
10-367
               

               
Cow position:
               
chrX:11314046-11313700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
160, 65
               

               
Conread position:
               
10-372
               

               
Cow position:
               
chrX:42507912-42507563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
10-378
               

               
Cow position:
               
chrX:2467612-2467975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
10-378
               

               
Cow position:
               
chrX:18118740-18118377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 114
               

               
Conread position:
               
10-378
               

               
Cow position:
               
chrX:24587722-24587360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 106
               

               
Conread position:
               
10-378
               

               
Cow position:
               
chrX:45404102-45403734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
63, 110
               

               
Conread position:
               
10-378
               

               
Cow position:
               
chrX:47344026-47344387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 189
               

               
Conread position:
               
10-392
               

               
Cow position:
               
chrX:47873609-47873231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 97
               

               
Conread position:
               
10-397
               

               
Cow position:
               
chrX:47191663-47191293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
10-400
               

               
Cow position:
               
chrX:38936431-38936813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 132
               

               
Conread position:
               
10-420
               

               
Cow position:
               
chrX:40481141-40480734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
38, 76
               

               
Conread position:
               
10-427
               

               
Cow position:
               
chrX:5017674-5017282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
10-430
               

               
Cow position:
               
chrX:17541696-17542102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 113
               

               
Conread position:
               
10-430
               

               
Cow position:
               
chrX:20801510-20801912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
10-435
               

               
Cow position:
               
chrX:13648052-13647637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
10-439
               

               
Cow position:
               
chrX:37836321-37836730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
10-440
               

               
Cow position:
               
chrX:11718048-11717630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 65
               

               
Conread position:
               
10-446
               

               
Cow position:
               
chrX:43527235-43527667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
10-447
               

               
Cow position:
               
chrX:11082881-11082461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 112
               

               
Conread position:
               
10-447
               

               
Cow position:
               
chrX:38007036-38006610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 100
               

               
Conread position:
               
10-495
               

               
Cow position:
               
chrX:31489244-31489740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 80
               

               
Conread position:
               
10-496
               

               
Cow position:
               
chrX:41526787-41526314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 31
               

               
Conread position:
               
10-508
               

               
Cow position:
               
chrX:9651313-9650794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
10-509
               

               
Cow position:
               
chrX:12437504-12437050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
467, 20
               

               
Conread position:
               
10-509
               

               
Cow position:
               
chrX:38094793-38094293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 127
               

               
Conread position:
               
10-511
               

               
Cow position:
               
chrX:12290468-12290954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 43
               

               
Conread position:
               
10-511
               

               
Cow position:
               
chrX:27705325-27705823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 68
               

               
Conread position:
               
10-512
               

               
Cow position:
               
chrX:7277662-7278142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 20
               

               
Conread position:
               
10-512
               

               
Cow position:
               
chrX:13912811-13913311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 116
               

               
Conread position:
               
10-512
               

               
Cow position:
               
chrX:22812794-22813301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 66
               

               
Conread position:
               
10-512
               

               
Cow position:
               
chrX:33855509-33854990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 137
               

               
Conread position:
               
10-514
               

               
Cow position:
               
chrX:25419428-25418925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
117, 27
               

               
Conread position:
               
10-514
               

               
Cow position:
               
chrX:42994346-42994834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 106
               

               
Conread position:
               
11-246
               

               
Cow position:
               
chrX:45658347-45658111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
11-276
               

               
Cow position:
               
chrX:19188669-19188937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 261
               

               
Conread position:
               
11-341
               

               
Cow position:
               
chrX:43408734-43409063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
129, 26
               

               
Conread position:
               
11-504
               

               
Cow position:
               
chrX:25337910-25338392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 130
               

               
Conread position:
               
11-510
               

               
Cow position:
               
chrX:30133591-30133089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 111
               

               
Conread position:
               
11-510
               

               
Cow position:
               
chrX:41790707-41790193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 54
               

               
Conread position:
               
12-219
               

               
Cow position:
               
chrX:48370830-48371041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
58, 128
               

               
Conread position:
               
12-268
               

               
Cow position:
               
chrX:35681069-35681333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
12-278
               

               
Cow position:
               
chrX:41743647-41743914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 111
               

               
Conread position:
               
12-279
               

               
Cow position:
               
chrX:40647712-40647989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 126
               

               
Conread position:
               
12-285
               

               
Cow position:
               
chrX:11674792-11675071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
12-423
               

               
Cow position:
               
chrX:917636-917232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
12-451
               

               
Cow position:
               
chrX:12309654-12309220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
12-475
               

               
Cow position:
               
chrX:13868431-13868901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 18
               

               
Conread position:
               
13-196
               

               
Cow position:
               
chrX:22873132-22873319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
13-265
               

               
Cow position:
               
chrX:45693841-45694091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
66, 176
               

               
Conread position:
               
13-500
               

               
Cow position:
               
chrX:27509286-27508800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 148
               

               
Conread position:
               
16-185
               

               
Cow position:
               
chrX:47247171-47247005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 125
               

               
Conread position:
               
16-201
               

               
Cow position:
               
chrX:31473260-31473450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
16-424
               

               
Cow position:
               
chrX:10412248-10411847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 68
               

               
Conread position:
               
16-513
               

               
Cow position:
               
chrX:27432180-27431687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
16-513
               

               
Cow position:
               
chrX:35288398-35288883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 105
               

               
Conread position:
               
16-514
               

               
Cow position:
               
chrX:13177726-13177246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
17-415
               

               
Cow position:
               
chrX:19689957-19690343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 121
               

               
Conread position:
               
17-440
               

               
Cow position:
               
chrX:37489470-37489871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
18-492
               

               
Cow position:
               
chrX:39546233-39545779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
194, 169
               

               
Conread position:
               
18-510
               

               
Cow position:
               
chrX:14973992-14973523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 49
               

               
Conread position:
               
18-514
               

               
Cow position:
               
chrX:9635439-9634954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
19-495
               

               
Cow position:
               
chrX:20151591-20152067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
19-512
               

               
Cow position:
               
chrX:25713542-25714011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 31
               

               
Conread position:
               
20-269
               

               
Cow position:
               
chrX:32020380-32020127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chrX:35258983-35258640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
24-216
               

               
Cow position:
               
chrX:48536920-48536724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
24-447
               

               
Cow position:
               
chrX:28878416-28878013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
24-510
               

               
Cow position:
               
chrX:24366083-24365588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
109, 34
               

               
Conread position:
               
24-510
               

               
Cow position:
               
chrX:25816150-25815664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
24-512
               

               
Cow position:
               
chrX:11073445-11072963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
26-278
               

               
Cow position:
               
chrX:42339188-42338944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
26-356
               

               
Cow position:
               
chrX:678820-678486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 216
               

               
Conread position:
               
26-510
               

               
Cow position:
               
chrX:23497915-23497463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 48
               

               
Conread position:
               
27-168
               

               
Cow position:
               
chrX:5556082-5555945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
28-371
               

               
Cow position:
               
chrX:20709822-20710158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
28-514
               

               
Cow position:
               
chrX:44054552-44055041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
29-195
               

               
Cow position:
               
chrX:45787405-45787568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
29-505
               

               
Cow position:
               
chrX:7721736-7722203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 6
               

               
Conread position:
               
31-437
               

               
Cow position:
               
chrX:9416943-9416534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 95
               

               
Conread position:
               
31-440
               

               
Cow position:
               
chrX:17888652-17888270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
32-260
               

               
Cow position:
               
chrX:2648597-2648369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
5, 92
               

               
Conread position:
               
32-389
               

               
Cow position:
               
chrX:16541922-16541555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
32-427
               

               
Cow position:
               
chrX:22821800-22822186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
5, 108
               

               
Conread position:
               
32-514
               

               
Cow position:
               
chrX:25571244-25570767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
5, 127
               

               
Conread position:
               
32-514
               

               
Cow position:
               
chrX:41083678-41084134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
5, 79
               

               
Conread position:
               
34-436
               

               
Cow position:
               
chrX:45174600-45174999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
49, 183
               

               
Conread position:
               
37-201
               

               
Cow position:
               
chrX:6607180-6607346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
90, 37
               

               
Conread position:
               
37-412
               

               
Cow position:
               
chrX:28111265-28111634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
37-439
               

               
Cow position:
               
chrX:27772197-27771814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
131, 41
               

               
Conread position:
               
38-401
               

               
Cow position:
               
chrX:7508899-7509253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
38, 71
               

               
Conread position:
               
38-465
               

               
Cow position:
               
chrX:17794745-17795159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 85
               

               
Conread position:
               
38-508
               

               
Cow position:
               
chrX:22074560-22075027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
38-512
               

               
Cow position:
               
chrX:17662837-17662385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 238
               

               
Conread position:
               
38-512
               

               
Cow position:
               
chrX:42492750-42492285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
40-433
               

               
Cow position:
               
chrX:32623345-32623716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
40-439
               

               
Cow position:
               
chrX:6690486-6690108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
41-242
               

               
Cow position:
               
chrX:44731357-44731562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
41-277
               

               
Cow position:
               
chrX:30833075-30832848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
41-277
               

               
Cow position:
               
chrX:40116188-40116418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
127, 41
               

               
Conread position:
               
41-347
               

               
Cow position:
               
chrX:41167201-41166902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
92, 97
               

               
Conread position:
               
41-439
               

               
Cow position:
               
chrX:45113391-45113772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
41-454
               

               
Cow position:
               
chrX:43567702-43568092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
41-510
               

               
Cow position:
               
chrX:11939161-11938719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 42
               

               
Conread position:
               
43-440
               

               
Cow position:
               
chrX:27394249-27393873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
43-446
               

               
Cow position:
               
chrX:15814862-15815242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
43-492
               

               
Cow position:
               
chrX:37119364-37119791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
43-507
               

               
Cow position:
               
chrX:30421174-30420736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 199
               

               
Conread position:
               
44-163
               

               
Cow position:
               
chrX:33519383-33519503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
44-230
               

               
Cow position:
               
chrX:6639890-6640082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 112
               

               
Conread position:
               
44-233
               

               
Cow position:
               
chrX:42499263-42499073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
44-243
               

               
Cow position:
               
chrX:2206778-2206585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
44-246
               

               
Cow position:
               
chrX:46984736-46984529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
44-265
               

               
Cow position:
               
chrX:2029156-2029381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
85, 79
               

               
Conread position:
               
44-268
               

               
Cow position:
               
chrX:2383255-2383481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
83, 79
               

               
Conread position:
               
44-275
               

               
Cow position:
               
chrX:43049108-43049349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
44-279
               

               
Cow position:
               
chrX:40540376-40540138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
44-337
               

               
Cow position:
               
chrX:9953907-9954189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
44-337
               

               
Cow position:
               
chrX:23970155-23970429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
44-343
               

               
Cow position:
               
chrX:9855066-9855354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
44-356
               

               
Cow position:
               
chrX:26876115-26875812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 50
               

               
Conread position:
               
44-392
               

               
Cow position:
               
chrX:27680169-27680503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
44-396
               

               
Cow position:
               
chrX:38935047-38935388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 95
               

               
Conread position:
               
44-400
               

               
Cow position:
               
chrX:21004450-21004797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
44-400
               

               
Cow position:
               
chrX:26625911-26625558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
44-431
               

               
Cow position:
               
chrX:1514638-1514275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
44-432
               

               
Cow position:
               
chrX:29032183-29032553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
170, 31
               

               
Conread position:
               
44-435
               

               
Cow position:
               
chrX:33493541-33493923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 94
               

               
Conread position:
               
44-439
               

               
Cow position:
               
chrX:41884652-41884260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
44-440
               

               
Cow position:
               
chrX:619242-618857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
44-441
               

               
Cow position:
               
chrX:4044084-4043713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 94
               

               
Conread position:
               
44-447
               

               
Cow position:
               
chrX:16416274-16416658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 41
               

               
Conread position:
               
44-467
               

               
Cow position:
               
chrX:23514252-23513839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
44-498
               

               
Cow position:
               
chrX:34543553-34544008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
44-501
               

               
Cow position:
               
chrX:38642026-38642467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
44-505
               

               
Cow position:
               
chrX:38549214-38549676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
44-507
               

               
Cow position:
               
chrX:45598838-45598377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
26, 98
               

               
Conread position:
               
44-508
               

               
Cow position:
               
chrX:7513282-7513741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 34
               

               
Conread position:
               
44-509
               

               
Cow position:
               
chrX:44961513-44961988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
44-510
               

               
Cow position:
               
chrX:6203321-6203755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
44-512
               

               
Cow position:
               
chrX:7425230-7425681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
44-513
               

               
Cow position:
               
chrX:6563278-6563733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
44-513
               

               
Cow position:
               
chrX:39558582-39558123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
44-513
               

               
Cow position:
               
chrX:42011046-42011498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 79
               

               
Conread position:
               
44-514
               

               
Cow position:
               
chrX:22624247-22624698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
44-514
               

               
Cow position:
               
chrX:39938751-39938300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
45-504
               

               
Cow position:
               
chrX:9201314-9201771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 93
               

               
Conread position:
               
45-509
               

               
Cow position:
               
chrX:36975716-36976182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
45-511
               

               
Cow position:
               
chrX:17231501-17231973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
46-277
               

               
Cow position:
               
chrX:877255-877032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
78, 92
               

               
Conread position:
               
46-278
               

               
Cow position:
               
chrX:8558695-8558457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
46-279
               

               
Cow position:
               
chrX:41198872-41199111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
46-280
               

               
Cow position:
               
chrX:11561922-11562162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
46-284
               

               
Cow position:
               
chrX:44053026-44053265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
46-378
               

               
Cow position:
               
chrX:48010362-48010695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
46-421
               

               
Cow position:
               
chrX:27176552-27176179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
46-432
               

               
Cow position:
               
chrX:6278738-6278353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 146
               

               
Conread position:
               
46-432
               

               
Cow position:
               
chrX:47054759-47054380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
46-510
               

               
Cow position:
               
chrX:30963104-30962640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
46-513
               

               
Cow position:
               
chrX:13382092-13382550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
47-268
               

               
Cow position:
               
chrX:42282205-42282420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
47-369
               

               
Cow position:
               
chrX:14900952-14900651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
78, 91
               

               
Conread position:
               
47-427
               

               
Cow position:
               
chrX:18456161-18456540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
47-434
               

               
Cow position:
               
chrX:37910222-37910591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
47-510
               

               
Cow position:
               
chrX:32431396-32431833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
47-513
               

               
Cow position:
               
chrX:12980060-12979598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
48-268
               

               
Cow position:
               
chrX:37048811-37048585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
25, 149
               

               
Conread position:
               
48-274
               

               
Cow position:
               
chrX:16790067-16789854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
200, 74
               

               
Conread position:
               
48-416
               

               
Cow position:
               
chrX:11455282-11454920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
140, 34
               

               
Conread position:
               
48-426
               

               
Cow position:
               
chrX:3130351-3130711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
48-485
               

               
Cow position:
               
chrX:35542661-35543093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 76
               

               
Conread position:
               
48-504
               

               
Cow position:
               
chrX:42381330-42380884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
32, 91
               

               
Conread position:
               
49-268
               

               
Cow position:
               
chrX:19019339-19019113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
49-366
               

               
Cow position:
               
chrX:11589821-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
49-372
               

               
Cow position:
               
chrX:13265849-13265542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
49-512
               

               
Cow position:
               
chrX:10959631-10959180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
50-246
               

               
Cow position:
               
chrX:4482734-4482936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
50-256
               

               
Cow position:
               
chrX:25411612-25411821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
51-245
               

               
Cow position:
               
chrX:48684450-48684258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 88
               

               
Conread position:
               
51-512
               

               
Cow position:
               
chrX:11856202-11856659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
52-400
               

               
Cow position:
               
chrX:4865025-4865346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
52-501
               

               
Cow position:
               
chrX:44396789-44397236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
72, 149
               

               
Conread position:
               
53-269
               

               
Cow position:
               
chrX:4750523-4750312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
115, 30
               

               
Conread position:
               
53-279
               

               
Cow position:
               
chrX:46315604-46315374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
53-317
               

               
Cow position:
               
chrX:29509669-29509408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
53-389
               

               
Cow position:
               
chrX:21642703-21642380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
71, 48
               

               
Conread position:
               
53-419
               

               
Cow position:
               
chrX:9041454-9041112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
71, 85
               

               
Conread position:
               
53-507
               

               
Cow position:
               
chrX:20792043-20791609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
53-514
               

               
Cow position:
               
chrX:1465962-1466401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
53-514
               

               
Cow position:
               
chrX:15305513-15305078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
54-239
               

               
Cow position:
               
chrX:16324187-16324003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
113, 70
               

               
Conread position:
               
54-280
               

               
Cow position:
               
chrX:17042466-17042696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
55-446
               

               
Cow position:
               
chrX:6265809-6265436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
55-504
               

               
Cow position:
               
chrX:6488363-6488792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 68
               

               
Conread position:
               
57-418
               

               
Cow position:
               
chrX:37574635-37574971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
58-266
               

               
Cow position:
               
chrX:36283125-36283342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
58-440
               

               
Cow position:
               
chrX:23091661-23092026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
58-506
               

               
Cow position:
               
chrX:29602053-29601598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 81
               

               
Conread position:
               
58-506
               

               
Cow position:
               
chrX:46073042-46072600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
58-508
               

               
Cow position:
               
chrX:1503119-1503539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 65
               

               
Conread position:
               
60-511
               

               
Cow position:
               
chrX:11633460-11633918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
61-425
               

               
Cow position:
               
chrX:29120841-29121185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 15
               

               
Conread position:
               
61-511
               

               
Cow position:
               
chrX:37781330-37780877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
62-243
               

               
Cow position:
               
chrX:46430075-46429893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
8, 62
               

               
Conread position:
               
62-282
               

               
Cow position:
               
chrX:8070916-8070691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
62-510
               

               
Cow position:
               
chrX:40567383-40567839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
63-430
               

               
Cow position:
               
chrX:39126123-39126469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
66-505
               

               
Cow position:
               
chrX:9425953-9425533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
67, 74
               

               
Conread position:
               
67-499
               

               
Cow position:
               
chrX:8869618-8869181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
68-514
               

               
Cow position:
               
chrX:27174785-27175239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
69-259
               

               
Cow position:
               
chrX:44063925-44063737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 69
               

               
Conread position:
               
69-278
               

               
Cow position:
               
chrX:47453918-47454134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 54
               

               
Conread position:
               
69-419
               

               
Cow position:
               
chrX:7161866-7162188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
69-427
               

               
Cow position:
               
chrX:38852988-38853338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
69-428
               

               
Cow position:
               
chrX:45845887-45846242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
64, 73
               

               
Conread position:
               
69-468
               

               
Cow position:
               
chrX:47046728-47046323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
64, 208
               

               
Conread position:
               
69-508
               

               
Cow position:
               
chrX:29542427-29541996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
69-511
               

               
Cow position:
               
chrX:40035653-40035207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 135
               

               
Conread position:
               
69-514
               

               
Cow position:
               
chrX:45110447-45110889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
55, 69
               

               
Conread position:
               
70-327
               

               
Cow position:
               
chrX:26285772-26286021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
117, 95
               

               
Conread position:
               
70-510
               

               
Cow position:
               
chrX:4826035-4825613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 49
               

               
Conread position:
               
71-347
               

               
Cow position:
               
chrX:36961428-36961701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
10, 209
               

               
Conread position:
               
71-378
               

               
Cow position:
               
chrX:841952-842248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
117, 83
               

               
Conread position:
               
71-511
               

               
Cow position:
               
chrX:46587611-46588056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 48
               

               
Conread position:
               
78-427
               

               
Cow position:
               
chrX:31340505-31340850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
49, 45
               

               
Conread position:
               
79-278
               

               
Cow position:
               
chrX:17908482-17908283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
79-323
               

               
Cow position:
               
chrX:28836099-28835866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
79-401
               

               
Cow position:
               
chrX:43973360-43973661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
172, 89
               

               
Conread position:
               
79-454
               

               
Cow position:
               
chrX:4515469-4515864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
44, 209
               

               
Conread position:
               
79-475
               

               
Cow position:
               
chrX:43780051-43779668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
45, 188
               

               
Conread position:
               
79-513
               

               
Cow position:
               
chrX:1499471-1499891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
80-378
               

               
Cow position:
               
chrX:40809489-40809784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
80-508
               

               
Cow position:
               
chrX:34411643-34412080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 58
               

               
Conread position:
               
80-511
               

               
Cow position:
               
chrX:33000706-33001134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
84-267
               

               
Cow position:
               
chrX:10252375-10252192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
84-392
               

               
Cow position:
               
chrX:47484465-47484159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
51, 56
               

               
Conread position:
               
86-440
               

               
Cow position:
               
chrX:43730406-43730071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 52
               

               
Conread position:
               
87-246
               

               
Cow position:
               
chrX:23785463-23785631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 36
               

               
Conread position:
               
87-440
               

               
Cow position:
               
chrX:31311835-31312182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
87-465
               

               
Cow position:
               
chrX:44657155-44656775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
46, 53
               

               
Conread position:
               
88-246
               

               
Cow position:
               
chrX:24149450-24149609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
88-279
               

               
Cow position:
               
chrX:1505523-1505712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
89-434
               

               
Cow position:
               
chrX:42235722-42235376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 189
               

               
Conread position:
               
92-447
               

               
Cow position:
               
chrX:36067834-36068177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
93-283
               

               
Cow position:
               
chrX:31256683-31256872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
96-480
               

               
Cow position:
               
chrX:7336645-7337045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
99-490
               

               
Cow position:
               
chrX:31252239-31252613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
100-507
               

               
Cow position:
               
chrX:47186498-47186095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
102-513
               

               
Cow position:
               
chrX:27145447-27145836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
104-439
               

               
Cow position:
               
chrX:22387421-22387098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
105-439
               

               
Cow position:
               
chrX:46433310-46433642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 177
               

               
Conread position:
               
106-513
               

               
Cow position:
               
chrX:34792482-34792086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
107-268
               

               
Cow position:
               
chrX:36723263-36723098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
114-427
               

               
Cow position:
               
chrX:37986069-37986365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 10
               

               
Conread position:
               
121-514
               

               
Cow position:
               
chrX:36355955-36356342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
123-273
               

               
Cow position:
               
chrX:35969236-35969088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
123-278
               

               
Cow position:
               
chrX:14003803-14003641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 154
               

               
Conread position:
               
123-467
               

               
Cow position:
               
chrX:32820870-32821208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
45, 155
               

               
Conread position:
               
123-478
               

               
Cow position:
               
chrX:41068569-41068920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 16
               

               
Conread position:
               
124-442
               

               
Cow position:
               
chrX:22465798-22466108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
124-492
               

               
Cow position:
               
chrX:27227966-27228345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
44, 156
               

               
Conread position:
               
124-512
               

               
Cow position:
               
chrX:6407391-6407780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
125-435
               

               
Cow position:
               
chrX:5680087-5679783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
125-510
               

               
Cow position:
               
chrX:35885886-35885497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 152
               

               
Conread position:
               
128-512
               

               
Cow position:
               
chrX:21986446-21986065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 141
               

               
Conread position:
               
129-400
               

               
Cow position:
               
chrX:48571145-48570875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
132-377
               

               
Cow position:
               
chrX:12405535-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
36, 5
               

               
Conread position:
               
132-440
               

               
Cow position:
               
chrX:29680409-29680107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 144
               

               
Conread position:
               
132-478
               

               
Cow position:
               
chrX:14275881-14275548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
132-505
               

               
Cow position:
               
chrX:4398981-4399347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
132-514
               

               
Cow position:
               
chrX:20584174-20584550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
133-440
               

               
Cow position:
               
chrX:9365822-9365523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
26, 141
               

               
Conread position:
               
133-495
               

               
Cow position:
               
chrX:37955689-37956064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
137-378
               

               
Cow position:
               
chrX:22921172-22921412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 117
               

               
Conread position:
               
137-440
               

               
Cow position:
               
chrX:11085201-11084912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
31, 127
               

               
Conread position:
               
137-510
               

               
Cow position:
               
chrX:39415510-39415156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
137-512
               

               
Cow position:
               
chrX:34313889-34314257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 32
               

               
Conread position:
               
137-514
               

               
Cow position:
               
chrX:35822198-35822569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
138-387
               

               
Cow position:
               
chrX:27685108-27685349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
138-400
               

               
Cow position:
               
chrX:21566263-21566520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
56, 21
               

               
Conread position:
               
138-509
               

               
Cow position:
               
chrX:11614556-11614908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 138
               

               
Conread position:
               
142-440
               

               
Cow position:
               
chrX:616401-616107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
26, 132
               

               
Conread position:
               
146-438
               

               
Cow position:
               
chrX:5679698-5679421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 102
               

               
Conread position:
               
146-509
               

               
Cow position:
               
chrX:40685466-40685096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 128
               

               
Conread position:
               
148-505
               

               
Cow position:
               
chrX:41027024-41027390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
148-513
               

               
Cow position:
               
chrX:34315397-34315764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
208, 17
               

               
Conread position:
               
149-440
               

               
Cow position:
               
chrX:42873260-42873538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
149-508
               

               
Cow position:
               
chrX:5919364-5919719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 75
               

               
Conread position:
               
150-419
               

               
Cow position:
               
chrX:45670099-45670354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
212, 38
               

               
Conread position:
               
150-421
               

               
Cow position:
               
chrX:19273854-19273573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
151-495
               

               
Cow position:
               
chrX:45875261-45875609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
154-511
               

               
Cow position:
               
chrX:34222586-34222948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 124
               

               
Conread position:
               
162-447
               

               
Cow position:
               
chrX:38654546-38654281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
164-514
               

               
Cow position:
               
chrX:33539051-33539389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
82, 90
               

               
Conread position:
               
165-478
               

               
Cow position:
               
chrX:13853509-13853804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
165-511
               

               
Cow position:
               
chrX:26881681-26881327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 100
               

               
Conread position:
               
165-511
               

               
Cow position:
               
chrX:42927932-42927595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 102
               

               
Conread position:
               
165-514
               

               
Cow position:
               
chrX:41870960-41871295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
264, 73
               

               
Conread position:
               
166-450
               

               
Cow position:
               
chrX:6260270-6259985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 117
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chrX:26493749-26493401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
170-329
               

               
Cow position:
               
chrX:35848453-35848606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
171-278
               

               
Cow position:
               
chrX:20790814-20790921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
80, 99
               

               
Conread position:
               
172-440
               

               
Cow position:
               
chrX:169646-169393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
22, 50
               

               
Conread position:
               
174-507
               

               
Cow position:
               
chrX:31515065-31515403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
77, 67
               

               
Conread position:
               
176-440
               

               
Cow position:
               
chrX:16348672-16348420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
12, 98
               

               
Conread position:
               
176-475
               

               
Cow position:
               
chrX:46291036-46291338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
199, 75
               

               
Conread position:
               
177-513
               

               
Cow position:
               
chrX:21327802-21328151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
12, 109
               

               
Conread position:
               
179-500
               

               
Cow position:
               
chrX:10516157-10516478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
69, 42
               

               
Conread position:
               
182-505
               

               
Cow position:
               
chrX:12095870-12095542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 81
               

               
Conread position:
               
182-512
               

               
Cow position:
               
chrX:34837150-34836836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
243, 39
               

               
Conread position:
               
183-501
               

               
Cow position:
               
chrX:20882032-20881736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
294, 88
               

               
Conread position:
               
183-506
               

               
Cow position:
               
chrX:38560462-38560780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
189-503
               

               
Cow position:
               
chrX:20168469-20168782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
189-504
               

               
Cow position:
               
chrX:918816-918501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 124
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chrX:33654930-33654609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
241, 39
               

               
Conread position:
               
189-512
               

               
Cow position:
               
chrX:29050158-29050478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
62, 82
               

               
Conread position:
               
192-426
               

               
Cow position:
               
chrX:36514980-36514753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
60, 80
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chrX:29549633-29549399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
59, 89
               

               
Conread position:
               
192-439
               

               
Cow position:
               
chrX:23562549-23562784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
192-439
               

               
Cow position:
               
chrX:37129183-37129421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
192-483
               

               
Cow position:
               
chrX:40680525-40680814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
63, 96
               

               
Conread position:
               
193-486
               

               
Cow position:
               
chrX:41271083-41270784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
30, 92
               

               
Conread position:
               
194-504
               

               
Cow position:
               
chrX:22115402-22115086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
6, 73
               

               
Conread position:
               
195-505
               

               
Cow position:
               
chrX:27261105-27261419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
197-514
               

               
Cow position:
               
chrX:42855374-42855700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 83
               

               
Conread position:
               
198-437
               

               
Cow position:
               
chrX:39220000-39220229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
199-475
               

               
Cow position:
               
chrX:23113199-23113474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
199-512
               

               
Cow position:
               
chrX:36866092-36866409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
52, 66
               

               
Conread position:
               
204-514
               

               
Cow position:
               
chrX:13121857-13122182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
59, 8
               

               
Conread position:
               
208-474
               

               
Cow position:
               
chrX:38208613-38208358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
208-508
               

               
Cow position:
               
chrX:4153105-4152812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
208-514
               

               
Cow position:
               
chrX:1088206-1087910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
220, 32
               

               
Conread position:
               
209-440
               

               
Cow position:
               
chrX:19097291-19097065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
212-469
               

               
Cow position:
               
chrX:15820531-15820777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
214-507
               

               
Cow position:
               
chrX:20678217-20677911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
37, 123
               

               
Conread position:
               
222-427
               

               
Cow position:
               
chrX:2003932-2003736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
222-470
               

               
Cow position:
               
chrX:31627037-31626793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 56
               

               
Conread position:
               
222-504
               

               
Cow position:
               
chrX:27511371-27511644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
222-514
               

               
Cow position:
               
chrX:39352724-39353010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
223-431
               

               
Cow position:
               
chrX:46429875-46429675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
224-508
               

               
Cow position:
               
chrX:35985764-35986047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
226-505
               

               
Cow position:
               
chrX:18964876-18964605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
229-426
               

               
Cow position:
               
chrX:19943286-19943097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
229-514
               

               
Cow position:
               
chrX:22393035-22392750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
187, 26
               

               
Conread position:
               
235-507
               

               
Cow position:
               
chrX:40336859-40337142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
236-430
               

               
Cow position:
               
chrX:29553243-29553428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
238-440
               

               
Cow position:
               
chrX:18046351-18046551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
8, 102
               

               
Conread position:
               
238-512
               

               
Cow position:
               
chrX:16984587-16984871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
240-508
               

               
Cow position:
               
chrX:42893879-42894154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
250-427
               

               
Cow position:
               
chrX:20743576-20743744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
268-514
               

               
Cow position:
               
chrX:27306437-27306677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
209, 20
               

               
Conread position:
               
271-451
               

               
Cow position:
               
chrX:6599797-6599618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
271-506
               

               
Cow position:
               
chrX:4289426-4289664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 160
               

               
Conread position:
               
271-508
               

               
Cow position:
               
chrX:11326113-11325877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 21
               

               
Conread position:
               
273-504
               

               
Cow position:
               
chrX:16836299-16836066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
168, 19
               

               
Conread position:
               
273-504
               

               
Cow position:
               
chrX:24633671-24633914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
273-505
               

               
Cow position:
               
chrX:19469520-19469285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
273-505
               

               
Cow position:
               
chrX:26205460-26205229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
274-514
               

               
Cow position:
               
chrX:2523692-2523462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
203, 7
               

               
Conread position:
               
275-501
               

               
Cow position:
               
chrX:27075063-27074826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
275-514
               

               
Cow position:
               
chrX:17956682-17956927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
157, 17
               

               
Conread position:
               
277-427
               

               
Cow position:
               
chrX:29733603-29733452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
278-511
               

               
Cow position:
               
chrX:26979798-26979555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
281-440
               

               
Cow position:
               
chrX:12191756-12191913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
141, 11
               

               
Conread position:
               
281-503
               

               
Cow position:
               
chrX:32318299-32318526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
61, 220
               

               
Conread position:
               
281-514
               

               
Cow position:
               
chrX:38587848-38587607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
146, 11
               

               
Conread position:
               
283-440
               

               
Cow position:
               
chrX:25411904-25412058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
283-475
               

               
Cow position:
               
chrX:31294576-31294372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
283-500
               

               
Cow position:
               
chrX:29478721-29478946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
283-514
               

               
Cow position:
               
chrX:42331275-42331510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
45, 9
               

               
Conread position:
               
284-440
               

               
Cow position:
               
chrX:23498680-23498527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
292-438
               

               
Cow position:
               
chrX:22915035-22914891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
292-440
               

               
Cow position:
               
chrX:21665236-21665089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 110
               

               
Conread position:
               
292-440
               

               
Cow position:
               
chrX:40532038-40531890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
292-474
               

               
Cow position:
               
chrX:23188775-23188593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
135, 52
               

               
Conread position:
               
292-499
               

               
Cow position:
               
chrX:35278334-35278533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
185, 110
               

               
Conread position:
               
292-499
               

               
Cow position:
               
chrX:42836186-42836404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
292-500
               

               
Cow position:
               
chrX:4645908-4645690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 105
               

               
Conread position:
               
292-500
               

               
Cow position:
               
chrX:19761759-19761973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
292-504
               

               
Cow position:
               
chrX:11762996-11762783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
185, 131
               

               
Conread position:
               
292-505
               

               
Cow position:
               
chrX:17966346-17966553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
132, 180
               

               
Conread position:
               
292-506
               

               
Cow position:
               
chrX:27668953-27668732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
137, 175
               

               
Conread position:
               
292-507
               

               
Cow position:
               
chrX:6559443-6559225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
292-509
               

               
Cow position:
               
chrX:1122538-1122314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
137, 52
               

               
Conread position:
               
292-509
               

               
Cow position:
               
chrX:11653769-11654000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
292-510
               

               
Cow position:
               
chrX:2935962-2936187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
292-510
               

               
Cow position:
               
chrX:3806687-3806912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
292-510
               

               
Cow position:
               
chrX:42450009-42449778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
292-511
               

               
Cow position:
               
chrX:24170724-24170489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
131, 88
               

               
Conread position:
               
292-512
               

               
Cow position:
               
chrX:4466972-4467187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
183, 131
               

               
Conread position:
               
292-513
               

               
Cow position:
               
chrX:17524379-17524146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
101, 112
               

               
Conread position:
               
292-514
               

               
Cow position:
               
chrX:42479838-42480065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
293-416
               

               
Cow position:
               
chrX:37665697-37665820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
293-508
               

               
Cow position:
               
chrX:38301815-38302047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
293-511
               

               
Cow position:
               
chrX:1719121-1719339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
140, 184
               

               
Conread position:
               
293-511
               

               
Cow position:
               
chrX:31744999-31744780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
293-514
               

               
Cow position:
               
chrX:19018825-19018590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
293-514
               

               
Cow position:
               
chrX:35658806-35659032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
136, 10
               

               
Conread position:
               
296-427
               

               
Cow position:
               
chrX:38722130-38722262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
296-442
               

               
Cow position:
               
chrX:27413521-27413666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
296-447
               

               
Cow position:
               
chrX:22628317-22628170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
296-499
               

               
Cow position:
               
chrX:31829452-31829248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
296-506
               

               
Cow position:
               
chrX:4559748-4559964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
133, 38
               

               
Conread position:
               
296-512
               

               
Cow position:
               
chrX:16324005-16323779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
131, 54
               

               
Conread position:
               
296-514
               

               
Cow position:
               
chrX:19717531-19717749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
144, 14
               

               
Conread position:
               
296-514
               

               
Cow position:
               
chrX:24054680-24054899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 138
               

               
Conread position:
               
296-514
               

               
Cow position:
               
chrX:35285182-35285413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
296-514
               

               
Cow position:
               
chrX:39180224-39179996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
133, 92
               

               
Conread position:
               
298-427
               

               
Cow position:
               
chrX:25788894-25788764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
298-507
               

               
Cow position:
               
chrX:32910115-32910328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
140, 83
               

               
Conread position:
               
301-440
               

               
Cow position:
               
chrX:23266429-23266567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
301-506
               

               
Cow position:
               
chrX:23088870-23089065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
302-508
               

               
Cow position:
               
chrX:907961-908173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
97, 61
               

               
Conread position:
               
303-496
               

               
Cow position:
               
chrX:31479987-31480186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
119, 55
               

               
Conread position:
               
303-501
               

               
Cow position:
               
chrX:35383020-35382817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 65
               

               
Conread position:
               
303-506
               

               
Cow position:
               
chrX:20583682-20583890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
126, 180
               

               
Conread position:
               
305-514
               

               
Cow position:
               
chrX:32747746-32747958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
307-485
               

               
Cow position:
               
chrX:3860608-3860440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
307-513
               

               
Cow position:
               
chrX:28940262-28940481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
311-446
               

               
Cow position:
               
chrX:18637513-18637648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
311-470
               

               
Cow position:
               
chrX:37062561-37062402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 147
               

               
Conread position:
               
311-504
               

               
Cow position:
               
chrX:5026280-5026479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
311-510
               

               
Cow position:
               
chrX:32866899-32867104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
311-514
               

               
Cow position:
               
chrX:32877351-32877141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
113, 174
               

               
Conread position:
               
312-512
               

               
Cow position:
               
chrX:11454209-11454411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 65
               

               
Conread position:
               
313-502
               

               
Cow position:
               
chrX:35681592-35681793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
313-508
               

               
Cow position:
               
chrX:23359085-23358885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
114, 40
               

               
Conread position:
               
315-440
               

               
Cow position:
               
chrX:23574683-23574806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
315-511
               

               
Cow position:
               
chrX:46909843-46910044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
317-513
               

               
Cow position:
               
chrX:48822312-48822105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
319-445
               

               
Cow position:
               
chrX:27667457-27667583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
319-504
               

               
Cow position:
               
chrX:36722773-36722585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
319-513
               

               
Cow position:
               
chrX:2551123-2551314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 112
               

               
Conread position:
               
322-507
               

               
Cow position:
               
chrX:27270410-27270600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 151
               

               
Conread position:
               
324-509
               

               
Cow position:
               
chrX:16556180-16555990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
111, 64
               

               
Conread position:
               
325-507
               

               
Cow position:
               
chrX:40116520-40116699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
152, 30
               

               
Conread position:
               
330-509
               

               
Cow position:
               
chrX:42875255-42875442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
330-511
               

               
Cow position:
               
chrX:45412196-45412008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
331-512
               

               
Cow position:
               
chrX:46068715-46068528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
96, 163
               

               
Conread position:
               
332-508
               

               
Cow position:
               
chrX:23136785-23136963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
98, 142
               

               
Conread position:
               
333-511
               

               
Cow position:
               
chrX:23108087-23108262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
333-514
               

               
Cow position:
               
chrX:6389127-6389317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
339-496
               

               
Cow position:
               
chrX:31827792-31827635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
100, 119
               

               
Conread position:
               
340-470
               

               
Cow position:
               
chrX:40543468-40543336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
340-509
               

               
Cow position:
               
chrX:41166772-41166596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 70
               

               
Conread position:
               
340-511
               

               
Cow position:
               
chrX:28923082-28923247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
340-513
               

               
Cow position:
               
chrX:12803-12980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
341-508
               

               
Cow position:
               
chrX:39489137-39488979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
133, 51
               

               
Conread position:
               
344-504
               

               
Cow position:
               
chrX:30042034-30041873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
121, 135
               

               
Conread position:
               
345-451
               

               
Cow position:
               
chrX:35019310-35019416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-513
               

               
Cow position:
               
chrX:11602424-11602250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
346-513
               

               
Cow position:
               
chrX:39642564-39642391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
346-514
               

               
Cow position:
               
chrX:17525808-17525639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 133
               

               
Conread position:
               
350-440
               

               
Cow position:
               
chrX:16481507-16481417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
350-514
               

               
Cow position:
               
chrX:5487876-5487710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
351-511
               

               
Cow position:
               
chrX:3494981-3494815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
353-514
               

               
Cow position:
               
chrX:25441478-25441320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
362-514
               

               
Cow position:
               
chrX:1571514-1571357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
362-514
               

               
Cow position:
               
chrX:35029851-35029698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
111, 132
               

               
Conread position:
               
370-506
               

               
Cow position:
               
chrX:20710255-20710388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
107, 59
               

               
Conread position:
               
381-508
               

               
Cow position:
               
chrX:22284784-22284915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               
Show alignments to all cow chromosomes.