Cow genome map

Conread name: mE7-MI-P-E7-aia-b-08-1-UM.s1

Conread position: 106-274
Cow position: chr10:32701791-32701961 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 106-274
Cow position: chr10:38344293-38344126 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 154

Conread position: 106-286
Cow position: chr10:3542002-3541826 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 34

Conread position: 106-306
Cow position: chr10:50135633-50135839 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 111-269
Cow position: chr10:42752201-42752362 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 111-273
Cow position: chr10:60360961-60361130 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 150

Conread position: 111-274
Cow position: chr10:30684424-30684259 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 44, 81

Conread position: 114-274
Cow position: chr10:24311291-24311130 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 41, 72

Conread position: 114-274
Cow position: chr10:36469374-36469217 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 87

Conread position: 114-274
Cow position: chr10:51782337-51782177 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 36, 94

Conread position: 114-274
Cow position: chr10:58597444-58597606 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 114-283
Cow position: chr10:8326245-8326082 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 151, 18

Conread position: 114-285
Cow position: chr10:40641034-40641206 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 42, 80

Conread position: 114-286
Cow position: chr10:55285020-55285206 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 174

Conread position: 114-289
Cow position: chr10:22583948-22583771 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 30, 105

Conread position: 115-272
Cow position: chr10:53321319-53321163 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 113, 38

Conread position: 115-274
Cow position: chr10:1665459-1665298 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 44, 106

Conread position: 115-274
Cow position: chr10:7897410-7897249 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 108

Conread position: 115-274
Cow position: chr10:55094342-55094504 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 109

Conread position: 115-283
Cow position: chr10:14804919-14805090 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 102

Conread position: 115-283
Cow position: chr10:34286333-34286505 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 106

Conread position: 115-285
Cow position: chr10:28642609-28642781 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 106

Conread position: 115-286
Cow position: chr10:41568175-41568348 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 24

Conread position: 115-317
Cow position: chr10:51844120-51843921 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 25, 61

Conread position: 116-284
Cow position: chr10:17433428-17433602 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 116-284
Cow position: chr10:47908007-47908179 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 102

Conread position: 118-269
Cow position: chr10:20375757-20375604 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 42, 132

Conread position: 126-285
Cow position: chr10:21739663-21739503 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 32, 95

Conread position: 127-287
Cow position: chr10:33870169-33870329 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 32, 94

Conread position: 130-271
Cow position: chr10:38849378-38849520 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 133

Conread position: 135-271
Cow position: chr10:58928328-58928469 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 13, 54

Conread position: 209-600
Cow position: chr10:37771021-37771415 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 243
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 171, 93

Conread position: 220-590
Cow position: chr10:40641101-40641474 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 261
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 44, 39

Conread position: 220-591
Cow position: chr10:14842924-14843285 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 247
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 22, 143

Conread position: 222-591
Cow position: chr10:36469307-36468941 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 257
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 11, 126

Conread position: 222-591
Cow position: chr10:55094417-55094787 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 82

Conread position: 222-601
Cow position: chr10:21739599-21739224 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 274
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 31, 38

Conread position: 229-601
Cow position: chr10:10583273-10583653 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 275
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 24, 10

Conread position: 230-591
Cow position: chr10:41878079-41878445 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 5

Conread position: 232-603
Cow position: chr10:32558507-32558885 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 263
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 76, 21

Conread position: 233-583
Cow position: chr10:51774047-51773702 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 257
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 70

Conread position: 237-498
Cow position: chr10:16926695-16926966 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 26, 66

Conread position: 237-591
Cow position: chr10:19840847-19841200 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 237-591
Cow position: chr10:39815235-39814877 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 30, 22

Conread position: 237-591
Cow position: chr10:41568263-41568622 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 237-591
Cow position: chr10:53321233-53320872 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 16

Conread position: 237-591
Cow position: chr10:57556173-57555814 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 261
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 16, 66

Conread position: 237-592
Cow position: chr10:50135732-50136090 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 26

Conread position: 237-595
Cow position: chr10:7280940-7280585 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-598
Cow position: chr10:14334683-14334306 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-601
Cow position: chr10:1378668-1379027 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-601
Cow position: chr10:21488128-21488489 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-601
Cow position: chr10:62407616-62407246 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 264
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 16, 67

Conread position: 237-602
Cow position: chr10:2119851-2119473 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 280
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 16, 66

Conread position: 237-602
Cow position: chr10:7897320-7896950 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 37

Conread position: 237-602
Cow position: chr10:29845482-29845119 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 26, 66

Conread position: 237-602
Cow position: chr10:30684331-30683960 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 108

Conread position: 268-590
Cow position: chr10:39778921-39778602 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 34

Conread position: 274-603
Cow position: chr10:22102437-22102770 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 28

Conread position: 277-563
Cow position: chr10:60361097-60361387 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 11, 69

Conread position: 277-602
Cow position: chr10:19512784-19513111 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 99, 25

Conread position: 280-528
Cow position: chr10:27664060-27663809 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 96, 22

Conread position: 280-583
Cow position: chr10:48397897-48397591 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 20, 70

Conread position: 280-591
Cow position: chr10:28256212-28255895 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 65

Conread position: 280-591
Cow position: chr10:39181000-39181317 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 54

Conread position: 280-597
Cow position: chr10:20375629-20375315 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 244
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 78

Conread position: 281-589
Cow position: chr10:42111625-42111938 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 65

Conread position: 281-602
Cow position: chr10:22583811-22583481 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 54, 21

Conread position: 281-602
Cow position: chr10:39040088-39039766 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 99, 21

Conread position: 281-602
Cow position: chr10:44708404-44708079 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 96, 21

Conread position: 281-603
Cow position: chr10:32701935-32702258 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 99, 21

Conread position: 281-603
Cow position: chr10:47908141-47908467 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 21

Conread position: 282-590
Cow position: chr10:20369867-20369579 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 92, 62

Conread position: 282-595
Cow position: chr10:57502018-57502328 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 94, 21

Conread position: 283-589
Cow position: chr10:64221193-64220908 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 93, 20

Conread position: 284-589
Cow position: chr10:29631591-29631279 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 62

Conread position: 286-599
Cow position: chr10:38344149-38343828 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 59

Conread position: 286-599
Cow position: chr10:57988784-57988465 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 54

Conread position: 287-591
Cow position: chr10:29101505-29101204 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 85, 51

Conread position: 294-597
Cow position: chr10:58812532-58812240 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 207
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 84, 50

Conread position: 297-591
Cow position: chr10:19495066-19494768 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 221
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 65, 47

Conread position: 297-597
Cow position: chr10:51782188-51781885 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 230
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 82, 38

Conread position: 297-599
Cow position: chr10:64146151-64146455 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 234
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 34, 48

Conread position: 297-601
Cow position: chr10:28946707-28947007 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 39

Conread position: 299-488
Cow position: chr10:15368378-15368183 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 77, 45

Conread position: 299-587
Cow position: chr10:39878206-39877902 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 73, 45

Conread position: 299-598
Cow position: chr10:42641817-42642099 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 76, 49

Conread position: 316-594
Cow position: chr10:47787930-47788199 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 97, 28

Conread position: 318-603
Cow position: chr10:20118373-20118093 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 53, 11

Conread position: 346-591
Cow position: chr10:21078894-21079137 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 8

Conread position: 354-590
Cow position: chr10:14862946-14863177 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 25, 57

Conread position: 354-593
Cow position: chr10:6538663-6538917 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 26, 166

Conread position: 356-601
Cow position: chr10:25652151-25651898 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 25, 63

Conread position: 368-591
Cow position: chr10:68160346-68160116 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 145

Conread position: 402-600
Cow position: chr10:19706302-19706101 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 51, 11

Conread position: 413-600
Cow position: chr10:8291391-8291577 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 19

Conread position: 421-598
Cow position: chr10:21517614-21517448 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 146, 17

Conread position: 427-602
Cow position: chr10:22346319-22346491 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 136, 75

Conread position: 436-591
Cow position: chr10:39439524-39439673 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 126, 22

Show alignments to all cow chromosomes.