Cow genome map
| Conread name: | mE7-MI-P-E7-aia-b-08-1-UM.s1 |
| Conread position: | 106-273 |
| Cow position: | chr13:25692455-25692618 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 43, 129 |
| Conread position: | 106-274 |
| Cow position: | chr13:16254611-16254442 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 106-274 |
| Cow position: | chr13:31730122-31729953 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 106-283 |
| Cow position: | chr13:34324786-34324602 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 106-327 |
| Cow position: | chr13:1592382-1592164 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 169 |
| Conread position: | 111-251 |
| Cow position: | chr13:47861603-47861746 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 114-594 |
| Cow position: | chr13:43982318-43981851 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 323 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 35, 103 |
| Conread position: | 115-271 |
| Cow position: | chr13:31733108-31732950 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 108 |
| Conread position: | 115-274 |
| Cow position: | chr13:43590113-43590272 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 58 |
| Conread position: | 115-285 |
| Cow position: | chr13:21697033-21697205 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 115-285 |
| Cow position: | chr13:42218131-42217959 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 115-286 |
| Cow position: | chr13:34153979-34153805 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 116-319 |
| Cow position: | chr13:30654598-30654388 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 99 |
| Conread position: | 122-282 |
| Cow position: | chr13:21908306-21908142 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 133-274 |
| Cow position: | chr13:15450320-15450178 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 203-593 |
| Cow position: | chr13:30276481-30276091 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 16, 52 |
| Conread position: | 222-591 |
| Cow position: | chr13:50110308-50110681 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 229-563 |
| Cow position: | chr13:6667267-6666934 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 151, 18 |
| Conread position: | 230-591 |
| Cow position: | chr13:32984478-32984116 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 234-599 |
| Cow position: | chr13:13325797-13326165 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 235-600 |
| Cow position: | chr13:28860032-28860402 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 237-590 |
| Cow position: | chr13:31733018-31732666 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-591 |
| Cow position: | chr13:678621-678979 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-591 |
| Cow position: | chr13:35758154-35758513 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-591 |
| Cow position: | chr13:43590201-43590549 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-599 |
| Cow position: | chr13:14402226-14401870 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-600 |
| Cow position: | chr13:13900739-13901105 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-601 |
| Cow position: | chr13:2387937-2387567 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 5, 23 |
| Conread position: | 237-601 |
| Cow position: | chr13:3653448-3653075 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 237-601 |
| Cow position: | chr13:4484666-4485030 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 237-601 |
| Cow position: | chr13:4942254-4942623 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-601 |
| Cow position: | chr13:15543412-15543778 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-601 |
| Cow position: | chr13:31730024-31729653 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 237-601 |
| Cow position: | chr13:32546261-32546630 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-602 |
| Cow position: | chr13:23002138-23001773 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 67 |
| Conread position: | 237-603 |
| Cow position: | chr13:17998428-17998799 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 239-601 |
| Cow position: | chr13:34041464-34041096 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 63 |
| Conread position: | 242-584 |
| Cow position: | chr13:47229123-47228776 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 262-478 |
| Cow position: | chr13:19414263-19414470 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 268-603 |
| Cow position: | chr13:29517902-29518236 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 119, 35 |
| Conread position: | 276-570 |
| Cow position: | chr13:8796891-8796600 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 279-573 |
| Cow position: | chr13:11794146-11793870 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 279-583 |
| Cow position: | chr13:48358555-48358854 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 281-601 |
| Cow position: | chr13:9045682-9045999 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 93, 21 |
| Conread position: | 281-601 |
| Cow position: | chr13:34342820-34343144 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 63 |
| Conread position: | 282-590 |
| Cow position: | chr13:34324639-34324348 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 285, 62 |
| Conread position: | 284-551 |
| Cow position: | chr13:57024610-57024876 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 284-597 |
| Cow position: | chr13:31507831-31508145 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 286-522 |
| Cow position: | chr13:30304209-30304460 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 286-598 |
| Cow position: | chr13:31611391-31611073 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 286-601 |
| Cow position: | chr13:15923463-15923141 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 294-571 |
| Cow position: | chr13:28670288-28670025 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 294-589 |
| Cow position: | chr13:34030549-34030833 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 297-597 |
| Cow position: | chr13:32924193-32923898 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 204, 47 |
| Conread position: | 297-603 |
| Cow position: | chr13:11797788-11797478 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 298-589 |
| Cow position: | chr13:34938383-34938667 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 49 |
| Conread position: | 298-603 |
| Cow position: | chr13:30239249-30239555 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 46 |
| Conread position: | 299-595 |
| Cow position: | chr13:5625054-5624762 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 301-601 |
| Cow position: | chr13:34909088-34908799 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 318-601 |
| Cow position: | chr13:6358074-6358362 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 323-600 |
| Cow position: | chr13:15519564-15519288 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 354-590 |
| Cow position: | chr13:5501015-5500771 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 354-599 |
| Cow position: | chr13:30654412-30654158 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 166 |
| Conread position: | 382-597 |
| Cow position: | chr13:42090670-42090456 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 77, 31 |
| Conread position: | 382-601 |
| Cow position: | chr13:3482797-3482580 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 385-601 |
| Cow position: | chr13:60468444-60468664 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 114 |
| Conread position: | 387-601 |
| Cow position: | chr13:33335276-33335072 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 390-602 |
| Cow position: | chr13:30011788-30011578 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 106 |
| Conread position: | 394-591 |
| Cow position: | chr13:42217652-42217454 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 428-591 |
| Cow position: | chr13:16253451-16253288 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 440-595 |
| Cow position: | chr13:47575164-47575316 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 55 |
Show alignments to all cow chromosomes.