Cow genome map

Conread name: mE7-MI-P-E7-aia-b-08-1-UM.s1

Conread position: 98-284
Cow position: chr14:46391896-46391702 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 127

Conread position: 103-283
Cow position: chr14:45028349-45028164 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 119

Conread position: 106-269
Cow position: chr14:37413098-37412936 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 110

Conread position: 106-271
Cow position: chr14:15275586-15275419 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 106-271
Cow position: chr14:17686046-17686213 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 106-274
Cow position: chr14:16919070-16918901 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 106-274
Cow position: chr14:38530812-38530641 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 50, 65

Conread position: 106-274
Cow position: chr14:44378445-44378615 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 34

Conread position: 106-286
Cow position: chr14:48825933-48826114 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 108

Conread position: 108-286
Cow position: chr14:45711073-45710896 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 47, 112

Conread position: 111-269
Cow position: chr14:33402337-33402503 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 111-287
Cow position: chr14:33677716-33677897 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 39, 118

Conread position: 111-475
Cow position: chr14:44775385-44775023 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 240
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 47, 134

Conread position: 114-272
Cow position: chr14:33237679-33237835 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 115-271
Cow position: chr14:17760224-17760066 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 62

Conread position: 115-271
Cow position: chr14:30666156-30666315 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 102

Conread position: 115-274
Cow position: chr14:1659111-1659272 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 106

Conread position: 115-274
Cow position: chr14:27978017-27978177 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 44, 24

Conread position: 115-285
Cow position: chr14:33604394-33604567 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 115-336
Cow position: chr14:40341707-40341932 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 18, 166

Conread position: 126-270
Cow position: chr14:44676787-44676932 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 134-273
Cow position: chr14:25366112-25365973 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 95, 8

Conread position: 154-293
Cow position: chr14:27990897-27990758 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 120

Conread position: 197-600
Cow position: chr14:45189080-45188696 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 280
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 15, 47

Conread position: 200-600
Cow position: chr14:44689778-44690184 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 284
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 104

Conread position: 201-603
Cow position: chr14:18105138-18105543 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 283
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 150

Conread position: 203-601
Cow position: chr14:7473066-7473465 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 55

Conread position: 205-601
Cow position: chr14:13303676-13304066 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 281
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 47, 32

Conread position: 221-573
Cow position: chr14:13462254-13462607 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 9

Conread position: 222-591
Cow position: chr14:46466417-46466771 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 260
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 32, 15

Conread position: 233-587
Cow position: chr14:44582103-44582476 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 255
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 58, 29

Conread position: 233-592
Cow position: chr14:27978101-27978459 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 8, 71

Conread position: 235-466
Cow position: chr14:2285072-2285308 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 25

Conread position: 237-483
Cow position: chr14:12742322-12742068 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 16, 37

Conread position: 237-498
Cow position: chr14:12899843-12900110 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 139, 59

Conread position: 237-557
Cow position: chr14:37224937-37225268 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 30, 67

Conread position: 237-590
Cow position: chr14:17000313-16999954 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 67

Conread position: 237-591
Cow position: chr14:1659201-1659559 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 30, 66

Conread position: 237-591
Cow position: chr14:45710977-45710625 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 66

Conread position: 237-595
Cow position: chr14:13833898-13834247 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 242
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 66

Conread position: 237-599
Cow position: chr14:30595623-30595242 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 277
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 66

Conread position: 237-601
Cow position: chr14:751312-751680 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 264
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 30, 22

Conread position: 237-601
Cow position: chr14:10147619-10147988 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 267
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 16, 66

Conread position: 237-601
Cow position: chr14:16272546-16272182 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 21

Conread position: 237-601
Cow position: chr14:19327516-19327149 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-602
Cow position: chr14:13274356-13274716 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 258
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 142, 65

Conread position: 237-602
Cow position: chr14:22030699-22030331 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-602
Cow position: chr14:29046939-29046559 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 265
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 30, 66

Conread position: 237-603
Cow position: chr14:11153406-11153034 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 37

Conread position: 237-603
Cow position: chr14:16918972-16918602 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-603
Cow position: chr14:48253566-48253199 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 268
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 16, 40

Conread position: 237-603
Cow position: chr14:50111541-50111917 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 10

Conread position: 238-598
Cow position: chr14:5513684-5514041 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 252
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 15, 65

Conread position: 238-601
Cow position: chr14:45081801-45082168 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 65

Conread position: 240-583
Cow position: chr14:32447712-32448058 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 218
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 18, 107

Conread position: 248-590
Cow position: chr14:48601576-48601241 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 131, 24

Conread position: 263-598
Cow position: chr14:33402458-33402793 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 246
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 23, 90

Conread position: 280-528
Cow position: chr14:10520712-10520462 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 68

Conread position: 280-528
Cow position: chr14:13620354-13620102 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 15, 66

Conread position: 280-545
Cow position: chr14:46637339-46637604 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 16, 65

Conread position: 280-590
Cow position: chr14:35385027-35384724 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 67

Conread position: 280-596
Cow position: chr14:33677856-33678172 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 237
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 14, 43

Conread position: 281-496
Cow position: chr14:29775293-29775066 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 13, 142

Conread position: 281-589
Cow position: chr14:13863305-13862995 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 21

Conread position: 281-590
Cow position: chr14:17760089-17759788 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 98, 21

Conread position: 281-601
Cow position: chr14:5529849-5530171 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 13, 65

Conread position: 281-602
Cow position: chr14:50139353-50139678 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 138

Conread position: 282-589
Cow position: chr14:44775246-44774944 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 231
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 97, 21

Conread position: 282-591
Cow position: chr14:30762087-30761775 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 214
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 97, 14

Conread position: 283-591
Cow position: chr14:44227165-44227480 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 63

Conread position: 284-591
Cow position: chr14:30705522-30705202 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 231
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 11, 56

Conread position: 285-587
Cow position: chr14:44255965-44255659 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 10, 55

Conread position: 285-590
Cow position: chr14:38147797-38148098 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 230
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 11, 27

Conread position: 285-591
Cow position: chr14:40168940-40168636 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 61

Conread position: 285-595
Cow position: chr14:5074745-5075060 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 23, 57

Conread position: 286-588
Cow position: chr14:37455118-37454833 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 58

Conread position: 286-601
Cow position: chr14:13779744-13780065 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 241
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 94, 17

Conread position: 292-598
Cow position: chr14:24996783-24996483 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 167, 41

Conread position: 293-589
Cow position: chr14:40341859-40342162 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 51

Conread position: 293-590
Cow position: chr14:43559037-43559338 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 68, 51

Conread position: 296-574
Cow position: chr14:45086046-45086327 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 84, 48

Conread position: 296-580
Cow position: chr14:43555784-43556066 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 86, 33

Conread position: 297-593
Cow position: chr14:23256549-23256258 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 80, 47

Conread position: 297-598
Cow position: chr14:17687310-17687607 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 122, 47

Conread position: 297-601
Cow position: chr14:15275044-15274725 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 79, 47

Conread position: 297-601
Cow position: chr14:20783261-20783581 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 238
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 83, 47

Conread position: 298-589
Cow position: chr14:44552658-44552941 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 227
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 12, 47

Conread position: 298-603
Cow position: chr14:30735979-30736286 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 81, 41

Conread position: 307-590
Cow position: chr14:13579209-13579487 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 54, 37

Conread position: 312-601
Cow position: chr14:190865-191158 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 227
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 68, 32

Conread position: 329-590
Cow position: chr14:27990765-27990508 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 206
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 36, 15

Conread position: 351-599
Cow position: chr14:25365630-25365375 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 28, 8

Conread position: 356-591
Cow position: chr14:30666338-30666579 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 25, 63

Conread position: 379-587
Cow position: chr14:30583705-30583499 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 50, 34

Conread position: 382-587
Cow position: chr14:28244778-28244576 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 77, 31

Conread position: 390-599
Cow position: chr14:44289969-44290177 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 67, 30

Conread position: 390-599
Cow position: chr14:44292114-44292322 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 67, 30

Conread position: 395-561
Cow position: chr14:47925995-47926156 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 107, 0

Conread position: 402-599
Cow position: chr14:13089773-13089966 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 53

Conread position: 408-598
Cow position: chr14:18417425-18417617 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 5, 84

Show alignments to all cow chromosomes.