Cow genome map

Conread name: mE7-MI-P-E7-aia-b-08-1-UM.s1

Conread position: 103-286
Cow position: chr16:1432494-1432677 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 55, 26

Conread position: 103-286
Cow position: chr16:56916762-56916586 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 36

Conread position: 106-239
Cow position: chr16:18497982-18497846 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 118

Conread position: 106-256
Cow position: chr16:16270834-16270684 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 36

Conread position: 106-266
Cow position: chr16:3330242-3330405 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 106-270
Cow position: chr16:19151316-19151145 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 34, 71

Conread position: 106-274
Cow position: chr16:37480832-37480665 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 114

Conread position: 106-274
Cow position: chr16:40295871-40295699 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 106-592
Cow position: chr16:1860525-1860994 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 116

Conread position: 106-603
Cow position: chr16:2410660-2410163 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 118

Conread position: 107-601
Cow position: chr16:28470794-28470301 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 32

Conread position: 108-285
Cow position: chr16:11283900-11284078 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 19

Conread position: 111-274
Cow position: chr16:16897771-16897933 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 30, 14

Conread position: 114-291
Cow position: chr16:10968019-10967849 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 144
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 44, 59

Conread position: 115-266
Cow position: chr16:49234316-49234163 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 128
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 41, 24

Conread position: 115-269
Cow position: chr16:51405636-51405484 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 23

Conread position: 115-271
Cow position: chr16:337481-337638 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 45, 79

Conread position: 115-274
Cow position: chr16:26105748-26105585 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 26, 35

Conread position: 115-274
Cow position: chr16:26978454-26978615 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 0

Conread position: 115-285
Cow position: chr16:21185929-21186101 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 44, 106

Conread position: 115-285
Cow position: chr16:25188963-25189134 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 99

Conread position: 115-287
Cow position: chr16:25171665-25171834 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 115-313
Cow position: chr16:23671011-23671215 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 126

Conread position: 117-306
Cow position: chr16:42736071-42735884 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 35

Conread position: 119-283
Cow position: chr16:49221560-49221396 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 22, 98

Conread position: 133-274
Cow position: chr16:20202332-20202469 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 82

Conread position: 143-286
Cow position: chr16:29034406-29034550 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 15, 132

Conread position: 197-591
Cow position: chr16:21185979-21186378 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 282
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 68, 77

Conread position: 201-592
Cow position: chr16:37482058-37481664 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 266
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 36, 17

Conread position: 230-601
Cow position: chr16:5662229-5662608 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 276
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 91, 5

Conread position: 233-563
Cow position: chr16:9209363-9209689 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 226
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 41

Conread position: 237-591
Cow position: chr16:837724-838077 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 40

Conread position: 237-591
Cow position: chr16:1432595-1432948 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-591
Cow position: chr16:10375195-10374837 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 16, 44

Conread position: 237-591
Cow position: chr16:10438656-10439017 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 260
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 16, 66

Conread position: 237-591
Cow position: chr16:17056566-17056214 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 243
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 60

Conread position: 237-591
Cow position: chr16:28196841-28196482 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 260
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 43, 66

Conread position: 237-591
Cow position: chr16:31591511-31591156 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 43

Conread position: 237-596
Cow position: chr16:28169955-28169581 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 275
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 16, 23

Conread position: 237-599
Cow position: chr16:26664157-26664523 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-599
Cow position: chr16:29047427-29047791 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-600
Cow position: chr16:8815700-8815337 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-600
Cow position: chr16:14665403-14665045 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 24

Conread position: 237-601
Cow position: chr16:406634-406268 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 57

Conread position: 237-601
Cow position: chr16:2726825-2726444 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 273
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 16, 66

Conread position: 237-601
Cow position: chr16:15567660-15568025 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 66

Conread position: 237-601
Cow position: chr16:23252033-23251655 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-601
Cow position: chr16:23983700-23984069 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-601
Cow position: chr16:27593911-27594276 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 237-601
Cow position: chr16:40295770-40295392 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 275
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 16, 66

Conread position: 237-602
Cow position: chr16:4478566-4478201 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 66

Conread position: 237-602
Cow position: chr16:15185476-15185848 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-602
Cow position: chr16:23535486-23535124 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 266
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 26, 66

Conread position: 237-603
Cow position: chr16:15477246-15477614 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 108

Conread position: 237-603
Cow position: chr16:43896870-43896488 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 272
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 17, 66

Conread position: 238-601
Cow position: chr16:5485136-5485498 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 259
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 15, 66

Conread position: 242-601
Cow position: chr16:54324926-54324566 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 61

Conread position: 259-555
Cow position: chr16:25258249-25258544 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 22

Conread position: 259-600
Cow position: chr16:23808752-23809087 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 18

Conread position: 279-598
Cow position: chr16:26105616-26105282 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 17, 67

Conread position: 280-591
Cow position: chr16:3088758-3088445 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 97, 64

Conread position: 280-593
Cow position: chr16:51084597-51084916 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 237
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 14, 66

Conread position: 281-563
Cow position: chr16:47474706-47474984 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 95, 58

Conread position: 281-601
Cow position: chr16:25342407-25342740 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 99, 21

Conread position: 281-601
Cow position: chr16:27732931-27732613 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 63

Conread position: 281-601
Cow position: chr16:28437027-28436700 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 98, 15

Conread position: 284-590
Cow position: chr16:23671146-23671466 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 10, 58

Conread position: 284-600
Cow position: chr16:2482687-2482366 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 18

Conread position: 285-601
Cow position: chr16:7676008-7675680 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 11, 61

Conread position: 286-592
Cow position: chr16:1567003-1566693 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 17, 59

Conread position: 286-599
Cow position: chr16:25442080-25442398 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 36

Conread position: 288-601
Cow position: chr16:12537493-12537179 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 200
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 42, 32

Conread position: 294-599
Cow position: chr16:38023784-38024090 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 213
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 85, 53

Conread position: 297-522
Cow position: chr16:56916608-56916373 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 79, 47

Conread position: 297-589
Cow position: chr16:27714347-27714066 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 88, 58

Conread position: 297-594
Cow position: chr16:3330402-3330701 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 47

Conread position: 297-596
Cow position: chr16:34530767-34531064 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 227
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 80, 47

Conread position: 298-590
Cow position: chr16:5890461-5890759 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 47

Conread position: 299-589
Cow position: chr16:25001835-25001536 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 204

Conread position: 301-591
Cow position: chr16:2238283-2238005 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 112, 43

Conread position: 306-591
Cow position: chr16:16897931-16898218 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 15

Conread position: 307-560
Cow position: chr16:3918539-3918796 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 70, 41

Conread position: 351-592
Cow position: chr16:9931259-9931492 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 9

Conread position: 356-595
Cow position: chr16:52591152-52590912 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 47

Conread position: 356-601
Cow position: chr16:19080486-19080739 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 63

Conread position: 368-590
Cow position: chr16:25933233-25933456 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 46, 139

Conread position: 368-603
Cow position: chr16:39366375-39366137 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 16, 65

Conread position: 375-589
Cow position: chr16:41685704-41685489 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 38, 135

Conread position: 376-591
Cow position: chr16:32937068-32937281 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 171
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 78, 29

Conread position: 382-589
Cow position: chr16:16228872-16229077 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 31, 111

Conread position: 383-554
Cow position: chr16:4367644-4367816 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 110

Conread position: 386-589
Cow position: chr16:1960055-1959858 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 165
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 67, 5

Conread position: 387-599
Cow position: chr16:7464872-7465086 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 32, 120

Conread position: 390-601
Cow position: chr16:40557385-40557176 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 109

Conread position: 398-602
Cow position: chr16:41571959-41572167 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 68

Conread position: 414-598
Cow position: chr16:18677934-18678121 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 422-601
Cow position: chr16:5527795-5527616 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 73

Conread position: 433-601
Cow position: chr16:37480255-37480087 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 72

Conread position: 437-574
Cow position: chr16:28158163-28158300 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 118
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 20, 68

Show alignments to all cow chromosomes.