Cow genome map
| Conread name: | mE7-MI-P-E7-aia-b-08-1-UM.s1 |
| Conread position: | 106-256 |
| Cow position: | chr17:11086844-11086690 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 106-271 |
| Cow position: | chr17:24029126-24028959 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 106-274 |
| Cow position: | chr17:6260735-6260907 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 106-284 |
| Cow position: | chr17:1880975-1881160 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 106-286 |
| Cow position: | chr17:20488820-20489000 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 122, 43 |
| Conread position: | 106-501 |
| Cow position: | chr17:15372103-15372495 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 106-595 |
| Cow position: | chr17:4060974-4061441 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 170 |
| Conread position: | 108-247 |
| Cow position: | chr17:16121664-16121523 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 71 |
| Conread position: | 111-237 |
| Cow position: | chr17:4082899-4083024 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 117, 21 |
| Conread position: | 114-267 |
| Cow position: | chr17:13705431-13705586 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 114-288 |
| Cow position: | chr17:4783966-4783795 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 115-269 |
| Cow position: | chr17:2174698-2174850 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 115-274 |
| Cow position: | chr17:1656963-1656801 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 147 |
| Conread position: | 115-274 |
| Cow position: | chr17:2078113-2077949 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 115-274 |
| Cow position: | chr17:14216142-14215981 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 115-274 |
| Cow position: | chr17:20390201-20390040 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 115-274 |
| Cow position: | chr17:43989386-43989548 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 115-287 |
| Cow position: | chr17:24783047-24783219 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 34, 107 |
| Conread position: | 116-270 |
| Cow position: | chr17:22558857-22559012 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 116-274 |
| Cow position: | chr17:20080982-20080825 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 102, 22 |
| Conread position: | 116-287 |
| Cow position: | chr17:54556-54386 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 112, 12 |
| Conread position: | 116-584 |
| Cow position: | chr17:2149321-2149753 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 117-265 |
| Cow position: | chr17:14040151-14040003 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 121-601 |
| Cow position: | chr17:11783731-11784201 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 129-266 |
| Cow position: | chr17:20403330-20403470 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 129-285 |
| Cow position: | chr17:20099571-20099410 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 63 |
| Conread position: | 129-599 |
| Cow position: | chr17:2263010-2263482 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 45 |
| Conread position: | 132-256 |
| Cow position: | chr17:22133112-22133235 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 135-274 |
| Cow position: | chr17:1787032-1786893 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 135-301 |
| Cow position: | chr17:31533118-31533280 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 98 |
| Conread position: | 215-601 |
| Cow position: | chr17:14240452-14240848 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 60 |
| Conread position: | 230-583 |
| Cow position: | chr17:150922-150566 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 120 |
| Conread position: | 230-592 |
| Cow position: | chr17:6120685-6121044 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 5 |
| Conread position: | 235-590 |
| Cow position: | chr17:22558940-22559297 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 237-498 |
| Cow position: | chr17:16856543-16856274 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-540 |
| Cow position: | chr17:6611512-6611205 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 237-589 |
| Cow position: | chr17:19267852-19267500 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 265 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 237-590 |
| Cow position: | chr17:14216052-14215693 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 237-591 |
| Cow position: | chr17:24783136-24783495 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-600 |
| Cow position: | chr17:6260836-6261204 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-601 |
| Cow position: | chr17:3655318-3654946 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 237-601 |
| Cow position: | chr17:9080446-9080077 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-601 |
| Cow position: | chr17:20390111-20389742 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 237-602 |
| Cow position: | chr17:24029027-24028656 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 241-591 |
| Cow position: | chr17:34157101-34157455 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 243-587 |
| Cow position: | chr17:20099484-20099142 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 10 |
| Conread position: | 261-597 |
| Cow position: | chr17:14296275-14295933 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 246 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 25, 82 |
| Conread position: | 275-581 |
| Cow position: | chr17:239350-239634 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 19, 5 |
| Conread position: | 280-573 |
| Cow position: | chr17:13675274-13674977 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 68 |
| Conread position: | 280-590 |
| Cow position: | chr17:8202971-8203271 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 280-591 |
| Cow position: | chr17:182592-182909 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 280-598 |
| Cow position: | chr17:4168202-4168520 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 109, 23 |
| Conread position: | 281-591 |
| Cow position: | chr17:4083043-4083352 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 98, 21 |
| Conread position: | 281-591 |
| Cow position: | chr17:15436802-15437117 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 281-601 |
| Cow position: | chr17:21769988-21769663 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 282-487 |
| Cow position: | chr17:16121533-16121331 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 177, 62 |
| Conread position: | 282-590 |
| Cow position: | chr17:20080851-20080549 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 62 |
| Conread position: | 283-596 |
| Cow position: | chr17:4941695-4941392 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 96, 61 |
| Conread position: | 284-590 |
| Cow position: | chr17:33284813-33284513 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 284-591 |
| Cow position: | chr17:251172-251469 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 36, 62 |
| Conread position: | 284-600 |
| Cow position: | chr17:15851709-15852036 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 286-591 |
| Cow position: | chr17:5227648-5227956 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 286-599 |
| Cow position: | chr17:6069574-6069891 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 286-599 |
| Cow position: | chr17:40805831-40806150 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 291-602 |
| Cow position: | chr17:11086697-11086379 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 53 |
| Conread position: | 297-600 |
| Cow position: | chr17:2580660-2580965 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 298-568 |
| Cow position: | chr17:42266453-42266710 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 298-590 |
| Cow position: | chr17:20403467-20403751 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 8, 46 |
| Conread position: | 298-590 |
| Cow position: | chr17:21418609-21418895 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 81, 46 |
| Conread position: | 298-591 |
| Cow position: | chr17:43989538-43989835 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 79, 46 |
| Conread position: | 299-590 |
| Cow position: | chr17:23038618-23038900 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 302-596 |
| Cow position: | chr17:2077955-2077656 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 307-590 |
| Cow position: | chr17:20086719-20086437 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 368-591 |
| Cow position: | chr17:2246969-2246748 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 384-573 |
| Cow position: | chr17:12855663-12855842 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 389-600 |
| Cow position: | chr17:3640770-3640562 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 395-603 |
| Cow position: | chr17:28027364-28027161 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 413-599 |
| Cow position: | chr17:38946504-38946704 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 421-590 |
| Cow position: | chr17:1881461-1881625 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 141, 21 |
| Conread position: | 425-594 |
| Cow position: | chr17:1704037-1704206 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 427-601 |
| Cow position: | chr17:733175-733002 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 435-595 |
| Cow position: | chr17:22133426-22133585 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 70 |
Show alignments to all cow chromosomes.