Cow genome map
| Conread name: | mE7-MI-P-E7-aia-b-08-1-UM.s1 |
| Conread position: | 106-256 |
| Cow position: | chr18:16175529-16175377 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 106-274 |
| Cow position: | chr18:14417072-14417236 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 106-274 |
| Cow position: | chr18:23798736-23798903 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 154 |
| Conread position: | 106-274 |
| Cow position: | chr18:37507048-37507214 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 106-274 |
| Cow position: | chr18:51461966-51461796 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 117 |
| Conread position: | 106-284 |
| Cow position: | chr18:56013662-56013846 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 106-286 |
| Cow position: | chr18:47742589-47742771 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 115 |
| Conread position: | 111-256 |
| Cow position: | chr18:28972792-28972646 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 103 |
| Conread position: | 111-274 |
| Cow position: | chr18:25352348-25352513 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 114-274 |
| Cow position: | chr18:18528189-18528352 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 115-271 |
| Cow position: | chr18:19353455-19353614 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 109 |
| Conread position: | 116-274 |
| Cow position: | chr18:51342782-51342943 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 116-283 |
| Cow position: | chr18:33751360-33751528 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 117-271 |
| Cow position: | chr18:16137994-16137838 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 117-313 |
| Cow position: | chr18:51274947-51274748 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 142 |
| Conread position: | 120-271 |
| Cow position: | chr18:54005071-54004918 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 129-269 |
| Cow position: | chr18:40345288-40345152 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 130-274 |
| Cow position: | chr18:42515306-42515455 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 235-601 |
| Cow position: | chr18:11273933-11273564 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 237-591 |
| Cow position: | chr18:51342872-51343224 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-592 |
| Cow position: | chr18:47742688-47743048 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-594 |
| Cow position: | chr18:29074173-29074517 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 237-595 |
| Cow position: | chr18:54004986-54004627 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 237-600 |
| Cow position: | chr18:33300499-33300846 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 67 |
| Conread position: | 237-601 |
| Cow position: | chr18:16079856-16080226 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-601 |
| Cow position: | chr18:25352442-25352816 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-601 |
| Cow position: | chr18:29865425-29865059 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 237-601 |
| Cow position: | chr18:41839626-41839253 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 139, 65 |
| Conread position: | 237-602 |
| Cow position: | chr18:52652095-52652465 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-603 |
| Cow position: | chr18:14417165-14417523 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-603 |
| Cow position: | chr18:37507143-37507514 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 238-601 |
| Cow position: | chr18:14131580-14131947 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 65 |
| Conread position: | 239-603 |
| Cow position: | chr18:40479581-40479948 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 28, 64 |
| Conread position: | 263-592 |
| Cow position: | chr18:54170305-54169964 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 281-603 |
| Cow position: | chr18:51482100-51482412 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 99, 21 |
| Conread position: | 282-592 |
| Cow position: | chr18:29238127-29238438 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 62 |
| Conread position: | 283-591 |
| Cow position: | chr18:38343061-38342751 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 285-570 |
| Cow position: | chr18:34043842-34044122 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 286-599 |
| Cow position: | chr18:28972654-28972335 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 286-601 |
| Cow position: | chr18:23798880-23799201 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 286-602 |
| Cow position: | chr18:16175385-16175066 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 287-591 |
| Cow position: | chr18:29407206-29406912 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 132, 16 |
| Conread position: | 297-592 |
| Cow position: | chr18:56013823-56014128 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 298-584 |
| Cow position: | chr18:54022884-54022595 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 298-590 |
| Cow position: | chr18:16137603-16137313 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 81, 46 |
| Conread position: | 314-590 |
| Cow position: | chr18:18851640-18851911 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 315-590 |
| Cow position: | chr18:27988446-27988727 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 329-601 |
| Cow position: | chr18:16089397-16089671 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 351-601 |
| Cow position: | chr18:36509910-36510168 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 363-591 |
| Cow position: | chr18:26245305-26245081 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 91, 9 |
| Conread position: | 369-599 |
| Cow position: | chr18:25921296-25921529 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 375-602 |
| Cow position: | chr18:33265665-33265910 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 136 |
| Conread position: | 379-596 |
| Cow position: | chr18:17672475-17672255 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 383-603 |
| Cow position: | chr18:43709355-43709568 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 388-594 |
| Cow position: | chr18:19471097-19471313 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 206 |
| Conread position: | 390-590 |
| Cow position: | chr18:35054481-35054670 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 407-598 |
| Cow position: | chr18:19485503-19485691 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 10, 77 |
| Conread position: | 441-597 |
| Cow position: | chr18:20835049-20835201 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
Show alignments to all cow chromosomes.