Cow genome map
| Conread name: | mE7-MI-P-E7-aia-b-08-1-UM.s1 |
| Conread position: | 105-286 |
| Cow position: | chr19:40851360-40851178 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 169 |
| Conread position: | 106-273 |
| Cow position: | chr19:40816427-40816253 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 106-274 |
| Cow position: | chr19:2273294-2273121 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 106-274 |
| Cow position: | chr19:4386712-4386874 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 106-274 |
| Cow position: | chr19:50723643-50723814 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 111-271 |
| Cow position: | chr19:30756313-30756476 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 114-487 |
| Cow position: | chr19:1656529-1656885 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 115-273 |
| Cow position: | chr19:3139030-3139192 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 115-274 |
| Cow position: | chr19:28594651-28594809 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 115-275 |
| Cow position: | chr19:28405607-28405441 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 116-271 |
| Cow position: | chr19:11522064-11521910 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 117-271 |
| Cow position: | chr19:28367117-28367266 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 87, 25 |
| Conread position: | 117-273 |
| Cow position: | chr19:35384511-35384353 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 104 |
| Conread position: | 118-288 |
| Cow position: | chr19:75158-74987 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 47 |
| Conread position: | 121-274 |
| Cow position: | chr19:20105831-20105986 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 102 |
| Conread position: | 121-274 |
| Cow position: | chr19:24294215-24294370 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 127-271 |
| Cow position: | chr19:256374-256520 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 129-274 |
| Cow position: | chr19:167443-167298 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 129-274 |
| Cow position: | chr19:7489464-7489612 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 129-275 |
| Cow position: | chr19:42583522-42583377 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 130-266 |
| Cow position: | chr19:23376928-23377067 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 134-286 |
| Cow position: | chr19:264515-264669 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 67 |
| Conread position: | 200-597 |
| Cow position: | chr19:1588084-1587690 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 102 |
| Conread position: | 216-600 |
| Cow position: | chr19:7343238-7343625 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 220-603 |
| Cow position: | chr19:38061601-38061993 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 222-591 |
| Cow position: | chr19:773775-774150 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 229-591 |
| Cow position: | chr19:39667347-39666996 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 44 |
| Conread position: | 230-591 |
| Cow position: | chr19:39482-39843 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 35, 5 |
| Conread position: | 237-590 |
| Cow position: | chr19:50723743-50724099 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 237-591 |
| Cow position: | chr19:20105915-20106272 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-591 |
| Cow position: | chr19:52150496-52150136 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-597 |
| Cow position: | chr19:40851260-40850907 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-599 |
| Cow position: | chr19:4386803-4387166 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-599 |
| Cow position: | chr19:5730060-5730409 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 66 |
| Conread position: | 237-601 |
| Cow position: | chr19:39184348-39183989 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 22 |
| Conread position: | 237-602 |
| Cow position: | chr19:33874615-33874972 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 237-602 |
| Cow position: | chr19:39391699-39392072 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 237-603 |
| Cow position: | chr19:28580473-28580114 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 238-601 |
| Cow position: | chr19:173447-173814 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 263-592 |
| Cow position: | chr19:40816302-40815962 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 269-591 |
| Cow position: | chr19:32210859-32210529 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 277-488 |
| Cow position: | chr19:3174039-3174263 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 280-571 |
| Cow position: | chr19:44031610-44031903 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 19, 66 |
| Conread position: | 280-601 |
| Cow position: | chr19:438209-437883 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 281-591 |
| Cow position: | chr19:5249505-5249187 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 90, 64 |
| Conread position: | 281-601 |
| Cow position: | chr19:43144947-43145264 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 282-592 |
| Cow position: | chr19:30756454-30756763 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 20 |
| Conread position: | 283-592 |
| Cow position: | chr19:27036367-27036078 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 120, 39 |
| Conread position: | 286-601 |
| Cow position: | chr19:892388-892080 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 286-601 |
| Cow position: | chr19:12774349-12774660 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 294-590 |
| Cow position: | chr19:1489755-1489450 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 294-591 |
| Cow position: | chr19:32140133-32139837 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 136, 50 |
| Conread position: | 297-589 |
| Cow position: | chr19:6713479-6713194 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 297-602 |
| Cow position: | chr19:342490-342784 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 111, 42 |
| Conread position: | 298-601 |
| Cow position: | chr19:7489602-7489910 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 300-591 |
| Cow position: | chr19:205757-206053 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 5 |
| Conread position: | 307-590 |
| Cow position: | chr19:28405442-28405164 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 311-579 |
| Cow position: | chr19:33653463-33653195 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 350-601 |
| Cow position: | chr19:16319332-16319073 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 354-601 |
| Cow position: | chr19:33942873-33943123 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 407-603 |
| Cow position: | chr19:2272741-2272555 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 424-598 |
| Cow position: | chr19:19178757-19178583 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 11 |
Show alignments to all cow chromosomes.