Cow genome map
| Conread name: | mE7-MI-P-E7-aia-b-08-1-UM.s1 |
| Conread position: | 106-274 |
| Cow position: | chr20:8216564-8216733 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 145 |
| Conread position: | 106-274 |
| Cow position: | chr20:12569571-12569742 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 106-274 |
| Cow position: | chr20:18314299-18314126 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 106-274 |
| Cow position: | chr20:23799934-23800105 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 106-285 |
| Cow position: | chr20:35125544-35125724 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 169 |
| Conread position: | 111-270 |
| Cow position: | chr20:19355823-19355983 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 111-270 |
| Cow position: | chr20:27338264-27338426 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 114-274 |
| Cow position: | chr20:14869897-14869737 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 114, 35 |
| Conread position: | 114-283 |
| Cow position: | chr20:10854282-10854107 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 114-286 |
| Cow position: | chr20:37581272-37581446 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 115-274 |
| Cow position: | chr20:16178708-16178547 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 21, 117 |
| Conread position: | 115-274 |
| Cow position: | chr20:19438975-19439135 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 85 |
| Conread position: | 118-271 |
| Cow position: | chr20:7083348-7083194 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 126-274 |
| Cow position: | chr20:9344040-9344188 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-271 |
| Cow position: | chr20:13678974-13678829 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 129-271 |
| Cow position: | chr20:30686648-30686790 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-274 |
| Cow position: | chr20:21395005-21395149 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 130-247 |
| Cow position: | chr20:9521059-9520939 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 132-286 |
| Cow position: | chr20:8973739-8973588 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 89 |
| Conread position: | 145-274 |
| Cow position: | chr20:32349357-32349488 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 222-591 |
| Cow position: | chr20:27338336-27338707 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 229-592 |
| Cow position: | chr20:23800027-23800393 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 237-594 |
| Cow position: | chr20:29949667-29950039 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-595 |
| Cow position: | chr20:28564432-28564082 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 150, 65 |
| Conread position: | 237-600 |
| Cow position: | chr20:30686722-30687093 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 237-601 |
| Cow position: | chr20:823921-824284 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-601 |
| Cow position: | chr20:5536086-5536461 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-601 |
| Cow position: | chr20:12569671-12570020 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-601 |
| Cow position: | chr20:13764054-13764412 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 52 |
| Conread position: | 237-601 |
| Cow position: | chr20:21915780-21916154 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-601 |
| Cow position: | chr20:23468513-23468149 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-601 |
| Cow position: | chr20:30429420-30429788 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 144, 65 |
| Conread position: | 237-602 |
| Cow position: | chr20:25849672-25849304 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 238-600 |
| Cow position: | chr20:17660589-17660225 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 17 |
| Conread position: | 238-601 |
| Cow position: | chr20:27870354-27870725 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 259-601 |
| Cow position: | chr20:28161986-28162342 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 262-600 |
| Cow position: | chr20:15096718-15096377 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 275-563 |
| Cow position: | chr20:5229326-5229040 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 101, 28 |
| Conread position: | 280-563 |
| Cow position: | chr20:13663864-13663570 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 14, 238 |
| Conread position: | 280-591 |
| Cow position: | chr20:22210236-22210542 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 281-557 |
| Cow position: | chr20:13678852-13678573 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 98, 21 |
| Conread position: | 281-589 |
| Cow position: | chr20:13499304-13499614 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 281-601 |
| Cow position: | chr20:15293184-15293499 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 21 |
| Conread position: | 281-603 |
| Cow position: | chr20:18967694-18968016 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 282-478 |
| Cow position: | chr20:28479883-28480067 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 155, 20 |
| Conread position: | 284-590 |
| Cow position: | chr20:9546865-9547154 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 95, 60 |
| Conread position: | 297-591 |
| Cow position: | chr20:9344177-9344462 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 76, 47 |
| Conread position: | 298-588 |
| Cow position: | chr20:16178557-16178259 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 298-591 |
| Cow position: | chr20:9520928-9520629 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 48 |
| Conread position: | 306-590 |
| Cow position: | chr20:19340858-19341137 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 83, 38 |
| Conread position: | 308-596 |
| Cow position: | chr20:20753572-20753290 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 312-603 |
| Cow position: | chr20:32120559-32120852 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 32 |
| Conread position: | 354-602 |
| Cow position: | chr20:12437158-12436903 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 357-563 |
| Cow position: | chr20:24615625-24615414 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 145 |
| Conread position: | 365-573 |
| Cow position: | chr20:42895296-42895089 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 382-601 |
| Cow position: | chr20:26054403-26054173 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 423-563 |
| Cow position: | chr20:41364296-41364158 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 433-591 |
| Cow position: | chr20:8972829-8972670 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 71 |
Show alignments to all cow chromosomes.