Cow genome map
| Conread name: | mE7-MI-P-E7-aia-b-08-1-UM.s1 |
| Conread position: | 90-602 |
| Cow position: | chr21:47646478-47646965 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 171 |
| Conread position: | 106-227 |
| Cow position: | chr21:48292612-48292738 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 106-256 |
| Cow position: | chr21:2882573-2882420 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 106-271 |
| Cow position: | chr21:26849857-26849688 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 106-274 |
| Cow position: | chr21:18817387-18817213 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 106-555 |
| Cow position: | chr21:28256593-28257022 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 300 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 170, 33 |
| Conread position: | 106-589 |
| Cow position: | chr21:4185069-4185536 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 106-601 |
| Cow position: | chr21:5018275-5018769 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 160 |
| Conread position: | 106-601 |
| Cow position: | chr21:10567832-10568332 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 135 |
| Conread position: | 111-274 |
| Cow position: | chr21:45782651-45782816 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 37, 105 |
| Conread position: | 111-588 |
| Cow position: | chr21:468034-468515 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 30 |
| Conread position: | 114-274 |
| Cow position: | chr21:218201-218360 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 114-274 |
| Cow position: | chr21:10851252-10851419 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 115-274 |
| Cow position: | chr21:27036227-27036066 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 115-274 |
| Cow position: | chr21:37935998-37936159 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 115-274 |
| Cow position: | chr21:47942121-47942280 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 44, 101 |
| Conread position: | 115-284 |
| Cow position: | chr21:2417385-2417562 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 16, 138 |
| Conread position: | 115-285 |
| Cow position: | chr21:40683272-40683100 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 115-457 |
| Cow position: | chr21:29625570-29625233 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 115-551 |
| Cow position: | chr21:2673833-2673390 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 198 |
| Conread position: | 119-314 |
| Cow position: | chr21:21915863-21916065 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 121-271 |
| Cow position: | chr21:37372417-37372568 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 125-272 |
| Cow position: | chr21:360843-360992 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 7 |
| Conread position: | 128-273 |
| Cow position: | chr21:4588789-4588645 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 92, 24 |
| Conread position: | 129-274 |
| Cow position: | chr21:27069775-27069631 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 132 |
| Conread position: | 213-574 |
| Cow position: | chr21:21714252-21713889 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 144 |
| Conread position: | 219-588 |
| Cow position: | chr21:2712183-2712534 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 22 |
| Conread position: | 230-583 |
| Cow position: | chr21:27567001-27567357 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 5 |
| Conread position: | 230-591 |
| Cow position: | chr21:37372494-37372854 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 230-592 |
| Cow position: | chr21:2512103-2512469 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 230-599 |
| Cow position: | chr21:30598224-30597841 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 235-540 |
| Cow position: | chr21:7063762-7064071 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 235-601 |
| Cow position: | chr21:12054758-12054388 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 235-601 |
| Cow position: | chr21:42914624-42914994 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 237-555 |
| Cow position: | chr21:27036137-27035815 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 237-593 |
| Cow position: | chr21:39426323-39426693 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-597 |
| Cow position: | chr21:27284730-27285094 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-599 |
| Cow position: | chr21:31515054-31514687 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-600 |
| Cow position: | chr21:5840001-5839630 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 237-601 |
| Cow position: | chr21:3780031-3780403 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 237-601 |
| Cow position: | chr21:10851348-10851706 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-601 |
| Cow position: | chr21:11506873-11507243 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-601 |
| Cow position: | chr21:33253444-33253812 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-601 |
| Cow position: | chr21:40270410-40270043 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 276-591 |
| Cow position: | chr21:45300960-45300660 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 27 |
| Conread position: | 280-590 |
| Cow position: | chr21:2417522-2417831 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 280-591 |
| Cow position: | chr21:26635853-26635538 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 280-597 |
| Cow position: | chr21:2539798-2539460 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 280-599 |
| Cow position: | chr21:28736479-28736796 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 280-600 |
| Cow position: | chr21:47942248-47942577 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 63 |
| Conread position: | 281-500 |
| Cow position: | chr21:11452245-11452018 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 95, 21 |
| Conread position: | 281-601 |
| Cow position: | chr21:26849711-26849388 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 97, 21 |
| Conread position: | 281-602 |
| Cow position: | chr21:35145066-35145381 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 99, 21 |
| Conread position: | 284-593 |
| Cow position: | chr21:360983-361286 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 284-602 |
| Cow position: | chr21:27069654-27069330 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 285-601 |
| Cow position: | chr21:147237-147553 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 292-437 |
| Cow position: | chr21:9893210-9893352 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 84, 51 |
| Conread position: | 297-591 |
| Cow position: | chr21:6625845-6626148 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 297-592 |
| Cow position: | chr21:45782805-45783092 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 297-599 |
| Cow position: | chr21:21519922-21520239 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 79, 52 |
| Conread position: | 307-591 |
| Cow position: | chr21:1286874-1286594 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 68, 37 |
| Conread position: | 324-594 |
| Cow position: | chr21:15278511-15278251 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 329-583 |
| Cow position: | chr21:25783206-25783469 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 365-595 |
| Cow position: | chr21:1778983-1779215 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 375-598 |
| Cow position: | chr21:21943180-21942955 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 117, 36 |
| Conread position: | 379-602 |
| Cow position: | chr21:2880415-2880191 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 383-591 |
| Cow position: | chr21:13298011-13298214 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 391-592 |
| Cow position: | chr21:28613742-28613947 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 391-594 |
| Cow position: | chr21:26836603-26836809 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 413-602 |
| Cow position: | chr21:41404756-41404945 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 80 |
| Conread position: | 414-591 |
| Cow position: | chr21:31250456-31250631 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 45, 91 |
| Conread position: | 415-597 |
| Cow position: | chr21:24085355-24085177 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 146, 9 |
| Conread position: | 419-591 |
| Cow position: | chr21:34655287-34655455 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 66, 45 |
| Conread position: | 432-602 |
| Cow position: | chr21:30563135-30563304 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 22, 8 |
Show alignments to all cow chromosomes.