Cow genome map

Conread name: mE7-MI-P-E7-aia-b-08-1-UM.s1

Conread position: 84-317
Cow position: chr22:8121115-8120879 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 18, 191

Conread position: 101-355
Cow position: chr22:6502153-6501897 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 40, 168

Conread position: 103-253
Cow position: chr22:1281742-1281585 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 106-261
Cow position: chr22:41418322-41418174 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 106-271
Cow position: chr22:5232299-5232131 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 106-274
Cow position: chr22:6332702-6332872 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 106-274
Cow position: chr22:12730691-12730525 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 106-274
Cow position: chr22:21590330-21590497 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 155

Conread position: 106-274
Cow position: chr22:39468528-39468356 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 106-286
Cow position: chr22:11032739-11032922 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 28, 45

Conread position: 106-287
Cow position: chr22:6602226-6602060 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 106-317
Cow position: chr22:1520031-1519818 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 172

Conread position: 106-317
Cow position: chr22:36184751-36184961 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 94

Conread position: 114-271
Cow position: chr22:290702-290543 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 114-274
Cow position: chr22:3273160-3273001 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 112, 27

Conread position: 114-286
Cow position: chr22:42992176-42992348 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 114, 160

Conread position: 114-298
Cow position: chr22:5937153-5936968 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 36

Conread position: 115-274
Cow position: chr22:1323208-1323369 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 16

Conread position: 115-274
Cow position: chr22:3277358-3277197 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 108

Conread position: 115-274
Cow position: chr22:30677682-30677525 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 95

Conread position: 115-274
Cow position: chr22:44477626-44477783 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 118, 24

Conread position: 115-285
Cow position: chr22:6021664-6021838 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 115-285
Cow position: chr22:11804053-11803880 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 109

Conread position: 115-285
Cow position: chr22:19536555-19536725 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 106

Conread position: 116-256
Cow position: chr22:3803190-3803331 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 43, 25

Conread position: 116-274
Cow position: chr22:37140900-37141062 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 33, 0

Conread position: 116-287
Cow position: chr22:37268163-37268339 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 164

Conread position: 116-598
Cow position: chr22:23801225-23800762 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 78

Conread position: 121-274
Cow position: chr22:16201935-16202091 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 14, 101

Conread position: 122-284
Cow position: chr22:694630-694796 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 99

Conread position: 129-274
Cow position: chr22:37133672-37133816 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 49

Conread position: 129-285
Cow position: chr22:35906366-35906217 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 53

Conread position: 132-297
Cow position: chr22:35670627-35670459 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 90

Conread position: 135-266
Cow position: chr22:3305556-3305423 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 135-274
Cow position: chr22:18028311-18028448 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 96, 70

Conread position: 141-274
Cow position: chr22:21035359-21035227 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 200-601
Cow position: chr22:36184814-36185215 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 271
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 61, 21

Conread position: 221-593
Cow position: chr22:1268692-1268303 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 301

Conread position: 230-601
Cow position: chr22:21195406-21195040 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 5

Conread position: 234-600
Cow position: chr22:44935058-44935425 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 69

Conread position: 237-483
Cow position: chr22:19320105-19320359 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 182
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 16, 66

Conread position: 237-590
Cow position: chr22:44492144-44492502 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 37

Conread position: 237-591
Cow position: chr22:694713-695064 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 259
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 16, 23

Conread position: 237-591
Cow position: chr22:3277267-3276909 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 262
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 28, 22

Conread position: 237-591
Cow position: chr22:7304564-7304207 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 258
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 28, 37

Conread position: 237-591
Cow position: chr22:10908743-10908388 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 31

Conread position: 237-591
Cow position: chr22:36860448-36860100 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 267
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 26, 66

Conread position: 237-594
Cow position: chr22:35906297-35905939 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 35

Conread position: 237-598
Cow position: chr22:18815274-18814910 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 262
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 16, 66

Conread position: 237-600
Cow position: chr22:31333956-31333591 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 263
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 26, 67

Conread position: 237-600
Cow position: chr22:46580628-46580261 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 261
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 30, 76

Conread position: 237-601
Cow position: chr22:559616-559246 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-601
Cow position: chr22:11803962-11803593 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 37

Conread position: 237-601
Cow position: chr22:17327365-17327000 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 37

Conread position: 237-601
Cow position: chr22:19536645-19537011 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 264
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 16, 23

Conread position: 237-602
Cow position: chr22:6332801-6333172 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-602
Cow position: chr22:34169430-34169798 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-602
Cow position: chr22:39468427-39468055 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 239-593
Cow position: chr22:18028379-18028738 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 21

Conread position: 242-591
Cow position: chr22:1879902-1880252 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 259
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 17

Conread position: 247-591
Cow position: chr22:21035288-21034942 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 56

Conread position: 255-574
Cow position: chr22:45510437-45510112 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 224
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 32, 99

Conread position: 263-591
Cow position: chr22:24951667-24952005 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 86

Conread position: 279-563
Cow position: chr22:33953986-33954271 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 197
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 110, 24

Conread position: 280-571
Cow position: chr22:34600479-34600769 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 14, 47

Conread position: 280-590
Cow position: chr22:15852548-15852870 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 69

Conread position: 280-593
Cow position: chr22:38550525-38550834 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 234
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 97, 64

Conread position: 280-600
Cow position: chr22:44458092-44458405 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 20, 68

Conread position: 281-583
Cow position: chr22:19243541-19243837 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 98, 15

Conread position: 281-589
Cow position: chr22:45582054-45582361 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 230
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 99, 22

Conread position: 281-590
Cow position: chr22:12730552-12730249 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 225
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 98, 63

Conread position: 281-591
Cow position: chr22:326053-325737 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 240
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 96, 21

Conread position: 282-593
Cow position: chr22:33351816-33352118 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 62

Conread position: 283-591
Cow position: chr22:522258-521945 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 95, 61

Conread position: 284-580
Cow position: chr22:6602097-6601806 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 221
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 10, 62

Conread position: 284-601
Cow position: chr22:42992311-42992633 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 62

Conread position: 284-601
Cow position: chr22:44397569-44397889 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 66

Conread position: 284-603
Cow position: chr22:13547635-13547312 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 213
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 11, 56

Conread position: 285-592
Cow position: chr22:44606538-44606233 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 20, 61

Conread position: 286-597
Cow position: chr22:3803323-3803635 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 18, 46

Conread position: 286-599
Cow position: chr22:19142553-19142228 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 18, 59

Conread position: 292-597
Cow position: chr22:1281571-1281280 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 41

Conread position: 293-590
Cow position: chr22:13773683-13773967 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 161, 39

Conread position: 295-590
Cow position: chr22:316663-316952 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 50, 21

Conread position: 297-590
Cow position: chr22:44368321-44368035 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 132, 47

Conread position: 297-598
Cow position: chr22:6501985-6501687 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 77, 47

Conread position: 297-600
Cow position: chr22:46585414-46585107 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 227
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 83, 47

Conread position: 297-602
Cow position: chr22:44348704-44348399 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 215
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 95, 60

Conread position: 299-589
Cow position: chr22:8120928-8120642 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 7, 46

Conread position: 307-592
Cow position: chr22:13673647-13673359 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 89, 37

Conread position: 309-592
Cow position: chr22:24536925-24537212 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 78, 35

Conread position: 324-590
Cow position: chr22:46614481-46614750 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 55, 24

Conread position: 346-591
Cow position: chr22:16202106-16202361 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 10, 75

Conread position: 354-602
Cow position: chr22:37292470-37292215 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 26, 63

Conread position: 359-589
Cow position: chr22:15352089-15352319 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 5, 71

Conread position: 399-591
Cow position: chr22:29012008-29011825 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 58

Conread position: 408-601
Cow position: chr22:21590683-21590880 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 6, 101

Conread position: 409-596
Cow position: chr22:37134339-37134521 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 26

Conread position: 413-589
Cow position: chr22:44518361-44518191 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 41, 70

Conread position: 424-598
Cow position: chr22:13766650-13766816 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 23, 34

Conread position: 468-589
Cow position: chr22:11807415-11807295 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 97, 36

Show alignments to all cow chromosomes.