Cow genome map
| Conread name: | mE7-MI-P-E7-aia-b-08-1-UM.s1 |
| Conread position: | 5-273 |
| Cow position: | chr23:11173645-11173389 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 40-274 |
| Cow position: | chr23:14923374-14923138 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 119, 183 |
| Conread position: | 85-274 |
| Cow position: | chr23:22146343-22146150 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 106-271 |
| Cow position: | chr23:11779776-11779943 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 106-274 |
| Cow position: | chr23:22167662-22167832 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 110 |
| Conread position: | 106-285 |
| Cow position: | chr23:16498246-16498068 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 106-286 |
| Cow position: | chr23:8287020-8287204 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 27, 171 |
| Conread position: | 106-287 |
| Cow position: | chr23:5873587-5873404 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 34, 166 |
| Conread position: | 106-598 |
| Cow position: | chr23:4639633-4639141 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 144 |
| Conread position: | 111-270 |
| Cow position: | chr23:16614439-16614280 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 111-274 |
| Cow position: | chr23:618468-618309 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 124, 26 |
| Conread position: | 111-591 |
| Cow position: | chr23:31649045-31648584 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 114-274 |
| Cow position: | chr23:14964046-14963888 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 91 |
| Conread position: | 114-286 |
| Cow position: | chr23:30237267-30237440 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 41, 161 |
| Conread position: | 114-583 |
| Cow position: | chr23:15876567-15876129 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 322 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 202, 77 |
| Conread position: | 114-584 |
| Cow position: | chr23:11077208-11076744 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 34 |
| Conread position: | 115-266 |
| Cow position: | chr23:13512112-13512260 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 115-271 |
| Cow position: | chr23:5739357-5739199 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 115-285 |
| Cow position: | chr23:23171501-23171673 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 115-290 |
| Cow position: | chr23:22943148-22942970 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 115-591 |
| Cow position: | chr23:2342079-2342524 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 331 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 119-271 |
| Cow position: | chr23:1401529-1401381 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 129-274 |
| Cow position: | chr23:19949577-19949430 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 129-274 |
| Cow position: | chr23:21243725-21243578 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 129-287 |
| Cow position: | chr23:26159701-26159536 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 143-287 |
| Cow position: | chr23:28218448-28218592 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 201-567 |
| Cow position: | chr23:14262922-14263293 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 174, 54 |
| Conread position: | 234-600 |
| Cow position: | chr23:20155124-20154773 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 237-563 |
| Cow position: | chr23:14923209-14922879 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 237-563 |
| Cow position: | chr23:14972885-14972554 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-591 |
| Cow position: | chr23:15526656-15527021 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 237-597 |
| Cow position: | chr23:14777868-14777513 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 237-598 |
| Cow position: | chr23:2758980-2759352 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-598 |
| Cow position: | chr23:19490633-19491002 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-598 |
| Cow position: | chr23:28218508-28218876 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-600 |
| Cow position: | chr23:3879995-3879633 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 261 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-601 |
| Cow position: | chr23:965403-965041 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 237-601 |
| Cow position: | chr23:22146221-22145852 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 237-603 |
| Cow position: | chr23:15178166-15178529 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 238-600 |
| Cow position: | chr23:4889777-4890140 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 25, 65 |
| Conread position: | 239-598 |
| Cow position: | chr23:27400614-27400974 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 248-590 |
| Cow position: | chr23:37716605-37716946 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 126, 24 |
| Conread position: | 250-591 |
| Cow position: | chr23:4818128-4818466 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 130, 10 |
| Conread position: | 279-593 |
| Cow position: | chr23:16054909-16055217 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 68 |
| Conread position: | 281-498 |
| Cow position: | chr23:1957020-1957236 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 95, 21 |
| Conread position: | 281-592 |
| Cow position: | chr23:16498108-16497799 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 65 |
| Conread position: | 281-596 |
| Cow position: | chr23:36030242-36029929 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 21 |
| Conread position: | 282-600 |
| Cow position: | chr23:2794124-2793804 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 283-479 |
| Cow position: | chr23:38581850-38582043 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 168, 61 |
| Conread position: | 284-589 |
| Cow position: | chr23:23282362-23282662 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 284-591 |
| Cow position: | chr23:1012665-1012369 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 284-594 |
| Cow position: | chr23:13510759-13511064 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 286-558 |
| Cow position: | chr23:16614037-16613763 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 286-602 |
| Cow position: | chr23:2025945-2025625 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 295-597 |
| Cow position: | chr23:21822131-21821845 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 118, 37 |
| Conread position: | 297-476 |
| Cow position: | chr23:25682805-25682625 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 297-591 |
| Cow position: | chr23:11714721-11714422 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 297-595 |
| Cow position: | chr23:29451202-29450902 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 297-601 |
| Cow position: | chr23:2718461-2718767 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 83, 42 |
| Conread position: | 298-591 |
| Cow position: | chr23:5873426-5873128 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 298-596 |
| Cow position: | chr23:4513619-4513934 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 307-594 |
| Cow position: | chr23:1022800-1022509 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 72, 13 |
| Conread position: | 309-602 |
| Cow position: | chr23:11779942-11780238 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 360-601 |
| Cow position: | chr23:7314115-7314364 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 375-559 |
| Cow position: | chr23:2440029-2439851 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 46 |
| Conread position: | 405-568 |
| Cow position: | chr23:22942730-22942570 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 157, 97 |
| Conread position: | 409-599 |
| Cow position: | chr23:15218610-15218429 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 445-599 |
| Cow position: | chr23:16486704-16486855 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 123, 42 |
Show alignments to all cow chromosomes.