Cow genome map

Conread name: mE7-MI-P-E7-aia-b-08-1-UM.s1

Conread position: 106-265
Cow position: chr28:8719907-8719746 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 43, 116

Conread position: 106-265
Cow position: chr28:10072314-10072473 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 106-274
Cow position: chr28:1386359-1386188 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 33

Conread position: 106-286
Cow position: chr28:7788855-7788678 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 35, 72

Conread position: 106-286
Cow position: chr28:29821035-29821216 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 169

Conread position: 106-601
Cow position: chr28:12151344-12151833 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 196

Conread position: 114-271
Cow position: chr28:29760882-29760723 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 45, 0

Conread position: 114-286
Cow position: chr28:5803086-5803260 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 51, 162

Conread position: 115-271
Cow position: chr28:2988035-2987881 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 39, 133

Conread position: 115-274
Cow position: chr28:5799346-5799502 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 58

Conread position: 115-274
Cow position: chr28:7027209-7027048 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 108

Conread position: 115-274
Cow position: chr28:24668660-24668819 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 34, 24

Conread position: 115-284
Cow position: chr28:10496481-10496311 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 35, 69

Conread position: 115-285
Cow position: chr28:1954402-1954574 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 43, 106

Conread position: 115-285
Cow position: chr28:6538216-6538044 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 108

Conread position: 116-274
Cow position: chr28:22232225-22232069 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 221-591
Cow position: chr28:21360612-21360990 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 126

Conread position: 222-603
Cow position: chr28:6778819-6778433 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 276
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 9, 14

Conread position: 234-584
Cow position: chr28:14232796-14232434 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 256
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 134, 69

Conread position: 235-591
Cow position: chr28:9179749-9180110 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 263
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 18, 25

Conread position: 235-591
Cow position: chr28:22042151-22041792 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 263
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 18, 25

Conread position: 235-603
Cow position: chr28:7741578-7741940 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 274
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 27, 46

Conread position: 237-498
Cow position: chr28:7788760-7788497 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 25, 66

Conread position: 237-591
Cow position: chr28:1506005-1506359 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-597
Cow position: chr28:29821134-29821498 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-599
Cow position: chr28:1166741-1166388 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 254
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 16, 66

Conread position: 237-599
Cow position: chr28:7003134-7003499 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 38

Conread position: 237-600
Cow position: chr28:14704249-14703880 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-600
Cow position: chr28:17389539-17389904 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 67

Conread position: 237-600
Cow position: chr28:26425111-26424756 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 11

Conread position: 237-601
Cow position: chr28:783795-784165 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-601
Cow position: chr28:1954492-1954863 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 16, 23

Conread position: 237-601
Cow position: chr28:2085597-2085968 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 268
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 16, 44

Conread position: 237-601
Cow position: chr28:3191117-3190749 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-601
Cow position: chr28:5750569-5750200 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 237-601
Cow position: chr28:8380202-8380540 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 257
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 16, 66

Conread position: 237-601
Cow position: chr28:12409096-12408722 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 271
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 16, 54

Conread position: 237-601
Cow position: chr28:13461119-13461474 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 32

Conread position: 237-601
Cow position: chr28:17666168-17665804 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 237-602
Cow position: chr28:22260013-22259646 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 66

Conread position: 242-591
Cow position: chr28:7827131-7827483 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 25, 17

Conread position: 263-591
Cow position: chr28:5765893-5766224 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 7

Conread position: 268-602
Cow position: chr28:29498816-29498494 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 224
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 72

Conread position: 279-591
Cow position: chr28:5803220-5803515 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 218
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 65

Conread position: 280-592
Cow position: chr28:5799472-5799785 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 66

Conread position: 280-594
Cow position: chr28:10460432-10460111 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 20, 68

Conread position: 281-601
Cow position: chr28:15034940-15034608 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 99, 21

Conread position: 281-603
Cow position: chr28:33253489-33253814 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 21

Conread position: 286-600
Cow position: chr28:32791195-32790889 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 242
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 18, 59

Conread position: 286-601
Cow position: chr28:5938670-5938991 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 59

Conread position: 286-601
Cow position: chr28:18519265-18518944 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 59

Conread position: 286-602
Cow position: chr28:5567323-5567632 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 237
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 18, 59

Conread position: 297-484
Cow position: chr28:11490058-11489875 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 51

Conread position: 297-590
Cow position: chr28:4575267-4574977 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 82, 36

Conread position: 297-592
Cow position: chr28:21566658-21566952 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 47

Conread position: 297-596
Cow position: chr28:12648486-12648176 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 60

Conread position: 297-602
Cow position: chr28:25039810-25039522 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 115, 47

Conread position: 298-588
Cow position: chr28:1386199-1385915 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 228
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 6, 40

Conread position: 298-601
Cow position: chr28:18146538-18146238 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 234
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 81, 31

Conread position: 302-594
Cow position: chr28:1216633-1216335 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 213
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 86, 42

Conread position: 307-601
Cow position: chr28:5112935-5112621 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 234
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 73, 38

Conread position: 354-601
Cow position: chr28:10580629-10580371 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 155

Conread position: 358-587
Cow position: chr28:13604013-13604251 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 20, 155

Conread position: 382-583
Cow position: chr28:6786548-6786743 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 181, 31

Conread position: 382-601
Cow position: chr28:1459377-1459598 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 47, 31

Conread position: 389-601
Cow position: chr28:34595522-34595735 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 26, 117

Conread position: 397-601
Cow position: chr28:14752083-14752288 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 100

Conread position: 407-602
Cow position: chr28:10470976-10471169 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 33

Conread position: 408-601
Cow position: chr28:24884225-24884412 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 21, 5

Conread position: 415-603
Cow position: chr28:25501161-25500977 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 148, 20

Conread position: 424-575
Cow position: chr28:11510954-11510796 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 432-603
Cow position: chr28:33637876-33638047 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 75

Conread position: 449-589
Cow position: chr28:24558960-24559096 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 116, 16

Show alignments to all cow chromosomes.