Cow genome map
| Conread name: | mE7-MI-P-E7-aia-b-08-1-UM.s1 |
| Conread position: | 103-601 |
| Cow position: | chr29:2840376-2839875 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 90 |
| Conread position: | 105-274 |
| Cow position: | chr29:7430215-7430044 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 105-274 |
| Cow position: | chr29:42803414-42803585 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 68 |
| Conread position: | 106-274 |
| Cow position: | chr29:10647245-10647075 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 106-274 |
| Cow position: | chr29:39078701-39078533 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 155 |
| Conread position: | 106-283 |
| Cow position: | chr29:27262892-27262714 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 106-315 |
| Cow position: | chr29:5981710-5981490 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 106-593 |
| Cow position: | chr29:15946819-15946364 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 88 |
| Conread position: | 106-602 |
| Cow position: | chr29:14210564-14210080 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 330 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 111-274 |
| Cow position: | chr29:32891795-32891964 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 114-271 |
| Cow position: | chr29:14085116-14084958 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 109 |
| Conread position: | 114-592 |
| Cow position: | chr29:646807-647272 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 332 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 115-269 |
| Cow position: | chr29:18855937-18855781 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 115-274 |
| Cow position: | chr29:35814962-35814801 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 115-285 |
| Cow position: | chr29:2747424-2747255 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 115-285 |
| Cow position: | chr29:31096369-31096197 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 115-286 |
| Cow position: | chr29:7845400-7845573 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 116-285 |
| Cow position: | chr29:3328347-3328519 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 106 |
| Conread position: | 118-271 |
| Cow position: | chr29:34754239-34754388 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 121-274 |
| Cow position: | chr29:13583098-13583253 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 102 |
| Conread position: | 127-286 |
| Cow position: | chr29:25931506-25931345 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 14, 149 |
| Conread position: | 177-274 |
| Cow position: | chr29:32287258-32287354 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 198-551 |
| Cow position: | chr29:3699014-3699366 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 150 |
| Conread position: | 216-602 |
| Cow position: | chr29:26163759-26163366 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 133 |
| Conread position: | 235-601 |
| Cow position: | chr29:13622756-13622391 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 237-484 |
| Cow position: | chr29:43323663-43323910 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 237-519 |
| Cow position: | chr29:10822879-10822588 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-528 |
| Cow position: | chr29:47335-47034 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-563 |
| Cow position: | chr29:35814872-35814543 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 237-592 |
| Cow position: | chr29:2465752-2465395 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 237-592 |
| Cow position: | chr29:13583182-13583538 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-592 |
| Cow position: | chr29:32541198-32541554 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-599 |
| Cow position: | chr29:19622179-19621812 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 237-600 |
| Cow position: | chr29:20252270-20252624 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 237-600 |
| Cow position: | chr29:25931428-25931064 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 237-601 |
| Cow position: | chr29:3328437-3328806 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-601 |
| Cow position: | chr29:7845490-7845857 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 237-601 |
| Cow position: | chr29:14587026-14587386 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 35 |
| Conread position: | 237-601 |
| Cow position: | chr29:16023673-16024030 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 237-601 |
| Cow position: | chr29:18855847-18855478 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 262 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 237-601 |
| Cow position: | chr29:31182507-31182875 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 237-601 |
| Cow position: | chr29:34798706-34798344 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 237-601 |
| Cow position: | chr29:42939094-42938725 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 264 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 237-602 |
| Cow position: | chr29:19654731-19655092 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 237-602 |
| Cow position: | chr29:38228081-38228446 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 237-603 |
| Cow position: | chr29:10647146-10646785 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 238-598 |
| Cow position: | chr29:5236121-5236485 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 242-601 |
| Cow position: | chr29:42092859-42093232 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 29, 111 |
| Conread position: | 263-591 |
| Cow position: | chr29:5981585-5981251 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 86 |
| Conread position: | 263-594 |
| Cow position: | chr29:13651174-13651498 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 277-500 |
| Cow position: | chr29:2747298-2747073 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 281-591 |
| Cow position: | chr29:30259383-30259081 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 98, 25 |
| Conread position: | 281-597 |
| Cow position: | chr29:18397361-18397670 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 281-601 |
| Cow position: | chr29:16345355-16345680 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 99, 21 |
| Conread position: | 282-527 |
| Cow position: | chr29:32804567-32804804 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 47 |
| Conread position: | 284-573 |
| Cow position: | chr29:45205648-45205950 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 284-589 |
| Cow position: | chr29:14084981-14084673 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 284-603 |
| Cow position: | chr29:32891938-32892247 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 286-563 |
| Cow position: | chr29:8664659-8664941 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 286-601 |
| Cow position: | chr29:15997503-15997184 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 59 |
| Conread position: | 286-601 |
| Cow position: | chr29:39078556-39078244 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 291-589 |
| Cow position: | chr29:251902-252193 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 297-591 |
| Cow position: | chr29:21425853-21425563 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 298-601 |
| Cow position: | chr29:45460906-45461214 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 300-596 |
| Cow position: | chr29:3176255-3175976 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 307-601 |
| Cow position: | chr29:2691338-2691630 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 307-601 |
| Cow position: | chr29:6264827-6264533 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 354-601 |
| Cow position: | chr29:2101051-2101306 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 26, 161 |
| Conread position: | 354-602 |
| Cow position: | chr29:40501785-40501535 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 82 |
| Conread position: | 359-573 |
| Cow position: | chr29:36635167-36634933 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 365-603 |
| Cow position: | chr29:21265941-21266180 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 368-591 |
| Cow position: | chr29:12793462-12793682 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 370-591 |
| Cow position: | chr29:27262482-27262259 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 139 |
| Conread position: | 382-601 |
| Cow position: | chr29:6198507-6198286 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 385-600 |
| Cow position: | chr29:19888833-19889053 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 395-603 |
| Cow position: | chr29:2146527-2146313 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 403-589 |
| Cow position: | chr29:13851605-13851418 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 407-601 |
| Cow position: | chr29:409975-409781 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 47, 100 |
| Conread position: | 416-596 |
| Cow position: | chr29:4633340-4633162 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 12 |
Show alignments to all cow chromosomes.