Cow genome map

Conread name: mH0-MI-P-HO-afz-d-08-1-UM.s1

Conread position: 1-133
Cow position: chr12:37697972-37698108 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 1-133
Cow position: chr12:40514619-40514482 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 1-137
Cow position: chr12:2511897-2512029 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 1-137
Cow position: chr12:39610907-39611044 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 28, 59

Conread position: 1-139
Cow position: chr12:6686436-6686294 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 1-178
Cow position: chr12:5273865-5274041 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 24, 14

Conread position: 1-184
Cow position: chr12:5800280-5800097 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 76

Conread position: 1-187
Cow position: chr12:5905031-5904846 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 142

Conread position: 1-209
Cow position: chr12:6954813-6954608 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 161, 140

Conread position: 1-246
Cow position: chr12:25365526-25365766 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 166
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 37

Conread position: 1-267
Cow position: chr12:10988854-10988591 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 16, 5

Conread position: 1-284
Cow position: chr12:6186648-6186929 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 144

Conread position: 1-305
Cow position: chr12:19868730-19868410 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 1-312
Cow position: chr12:32849062-32848755 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 64, 151

Conread position: 1-316
Cow position: chr12:48416242-48416561 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 80

Conread position: 1-318
Cow position: chr12:8172405-8172093 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 146

Conread position: 1-321
Cow position: chr12:5165879-5165562 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 204
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 165, 52

Conread position: 1-323
Cow position: chr12:5713461-5713143 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 19

Conread position: 1-323
Cow position: chr12:9988197-9988507 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 31

Conread position: 1-323
Cow position: chr12:10931586-10931264 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 150

Conread position: 1-323
Cow position: chr12:21611097-21610783 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 8

Conread position: 1-323
Cow position: chr12:24558072-24557759 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 51

Conread position: 1-323
Cow position: chr12:43681504-43681184 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 148

Conread position: 1-324
Cow position: chr12:15939379-15939683 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 142

Conread position: 1-324
Cow position: chr12:17969463-17969166 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 233
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 42, 0

Conread position: 1-324
Cow position: chr12:22594254-22593943 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 14

Conread position: 1-324
Cow position: chr12:25313213-25313535 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 146

Conread position: 1-324
Cow position: chr12:28571872-28571562 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 42

Conread position: 1-324
Cow position: chr12:33297130-33296811 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 143

Conread position: 1-324
Cow position: chr12:41973274-41973594 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 71

Conread position: 1-326
Cow position: chr12:11582656-11582346 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 1-326
Cow position: chr12:35367880-35367577 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 36

Conread position: 1-343
Cow position: chr12:15821219-15820892 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 78

Conread position: 1-358
Cow position: chr12:24206030-24205679 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 135

Conread position: 2-324
Cow position: chr12:31217676-31217364 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 161, 100

Conread position: 3-237
Cow position: chr12:30011472-30011699 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 160, 32

Conread position: 3-254
Cow position: chr12:30016579-30016823 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 160, 32

Conread position: 3-263
Cow position: chr12:21557445-21557188 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 34, 143

Conread position: 3-309
Cow position: chr12:28840307-28840001 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 198
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 18, 46

Conread position: 3-326
Cow position: chr12:38893863-38893540 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 160

Conread position: 5-326
Cow position: chr12:21484897-21484588 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 33, 11

Conread position: 5-340
Cow position: chr12:22686979-22686660 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 228
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 71, 36

Conread position: 6-137
Cow position: chr12:6404292-6404426 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 6-137
Cow position: chr12:7651344-7651473 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 6-140
Cow position: chr12:8542384-8542517 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 6-172
Cow position: chr12:30593613-30593777 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 153

Conread position: 6-173
Cow position: chr12:36149178-36149345 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 23, 136

Conread position: 6-173
Cow position: chr12:40867828-40867661 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 15, 136

Conread position: 6-179
Cow position: chr12:27852159-27852328 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 157, 28

Conread position: 6-180
Cow position: chr12:21202325-21202149 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 129

Conread position: 6-180
Cow position: chr12:26268721-26268895 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 136

Conread position: 6-184
Cow position: chr12:14940460-14940282 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 155

Conread position: 6-205
Cow position: chr12:32900657-32900856 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 140

Conread position: 6-232
Cow position: chr12:1855364-1855589 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 18, 68

Conread position: 6-233
Cow position: chr12:10790751-10790978 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 18, 136

Conread position: 6-236
Cow position: chr12:17787146-17787376 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 18, 144

Conread position: 6-276
Cow position: chr12:3364382-3364112 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-283
Cow position: chr12:1885845-1886122 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 18, 70

Conread position: 6-284
Cow position: chr12:25838779-25838501 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 23, 69

Conread position: 6-288
Cow position: chr12:14214556-14214274 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-288
Cow position: chr12:25260257-25260537 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 138

Conread position: 6-292
Cow position: chr12:23475245-23474962 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 6-308
Cow position: chr12:23159024-23159308 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 32

Conread position: 6-308
Cow position: chr12:42604689-42604989 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 78

Conread position: 6-316
Cow position: chr12:21452482-21452792 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-317
Cow position: chr12:3180904-3180593 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 143

Conread position: 6-322
Cow position: chr12:249826-250138 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 134

Conread position: 6-323
Cow position: chr12:11101743-11101427 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 140

Conread position: 6-323
Cow position: chr12:18586168-18585852 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 144

Conread position: 6-323
Cow position: chr12:34177050-34176734 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-324
Cow position: chr12:10359192-10358874 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 145

Conread position: 6-324
Cow position: chr12:20459227-20459541 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 136

Conread position: 6-324
Cow position: chr12:24028988-24029300 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 135

Conread position: 6-324
Cow position: chr12:25096772-25097087 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 58

Conread position: 6-324
Cow position: chr12:27506154-27506471 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 144

Conread position: 6-324
Cow position: chr12:31328834-31329152 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 144

Conread position: 6-324
Cow position: chr12:41337737-41338054 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 144

Conread position: 6-325
Cow position: chr12:22202186-22202507 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 136

Conread position: 6-326
Cow position: chr12:1007511-1007192 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 91

Conread position: 6-326
Cow position: chr12:1056014-1056331 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 135

Conread position: 6-326
Cow position: chr12:1511270-1511587 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 66

Conread position: 6-326
Cow position: chr12:2229066-2228747 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-326
Cow position: chr12:5107553-5107234 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-326
Cow position: chr12:5110569-5110884 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-326
Cow position: chr12:7674397-7674078 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-326
Cow position: chr12:8839749-8839430 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-326
Cow position: chr12:12928415-12928730 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 144

Conread position: 6-326
Cow position: chr12:14423852-14423526 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 163

Conread position: 6-326
Cow position: chr12:14568329-14568638 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 136

Conread position: 6-326
Cow position: chr12:15720071-15720386 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 136

Conread position: 6-326
Cow position: chr12:15925258-15925575 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-326
Cow position: chr12:16301843-16302162 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-326
Cow position: chr12:21250819-21251137 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-326
Cow position: chr12:22748711-22748391 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 144

Conread position: 6-326
Cow position: chr12:22979398-22979715 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-326
Cow position: chr12:25265838-25266157 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 141

Conread position: 6-326
Cow position: chr12:27958030-27958349 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 139

Conread position: 6-326
Cow position: chr12:28012736-28013055 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 143

Conread position: 6-326
Cow position: chr12:32011282-32011601 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-326
Cow position: chr12:32657044-32656725 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 155

Conread position: 6-326
Cow position: chr12:32758191-32757873 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 66

Conread position: 6-326
Cow position: chr12:35163278-35162940 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 145

Conread position: 6-326
Cow position: chr12:35547640-35547952 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 74

Conread position: 6-326
Cow position: chr12:37562499-37562183 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 102

Conread position: 6-326
Cow position: chr12:39930660-39930345 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 136

Conread position: 6-326
Cow position: chr12:46111622-46111941 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-331
Cow position: chr12:22480619-22480296 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 135

Conread position: 6-341
Cow position: chr12:24447373-24447707 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 146

Conread position: 6-343
Cow position: chr12:25148123-25148457 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 6-343
Cow position: chr12:36445880-36445547 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 142

Conread position: 7-156
Cow position: chr12:4004411-4004562 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 96

Conread position: 7-302
Cow position: chr12:32483330-32483611 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 22, 31

Conread position: 7-324
Cow position: chr12:3716779-3717095 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 146

Conread position: 7-325
Cow position: chr12:5226724-5226409 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 26

Conread position: 7-326
Cow position: chr12:259224-258906 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 143

Conread position: 7-343
Cow position: chr12:2285758-2285436 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 25

Conread position: 8-323
Cow position: chr12:21659319-21659006 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 213
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 131, 23

Conread position: 8-326
Cow position: chr12:1405940-1405625 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 134

Conread position: 8-326
Cow position: chr12:10076151-10075838 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 134

Conread position: 8-326
Cow position: chr12:17718792-17718477 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 64

Conread position: 8-326
Cow position: chr12:23137835-23138152 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 154

Conread position: 8-326
Cow position: chr12:31027327-31027643 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 155

Conread position: 9-193
Cow position: chr12:32917822-32917638 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 133

Conread position: 9-241
Cow position: chr12:1501569-1501352 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 150, 25

Conread position: 9-283
Cow position: chr12:21946478-21946217 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 9-305
Cow position: chr12:19155368-19155663 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 129

Conread position: 9-315
Cow position: chr12:28763524-28763827 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 101

Conread position: 9-324
Cow position: chr12:19871704-19871390 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 136

Conread position: 9-324
Cow position: chr12:21313941-21314251 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 133

Conread position: 9-324
Cow position: chr12:36568858-36569166 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 212
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 154, 8

Conread position: 9-325
Cow position: chr12:21432831-21432517 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 138

Conread position: 9-325
Cow position: chr12:32147138-32147452 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 140

Conread position: 9-326
Cow position: chr12:13042749-13043065 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 141

Conread position: 9-326
Cow position: chr12:21212275-21211960 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 111

Conread position: 9-326
Cow position: chr12:21665628-21665312 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 141

Conread position: 9-326
Cow position: chr12:36287523-36287836 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 129

Conread position: 9-327
Cow position: chr12:22517362-22517677 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 133

Conread position: 10-268
Cow position: chr12:8642241-8641985 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 132

Conread position: 10-322
Cow position: chr12:32088726-32088417 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 153, 25

Conread position: 10-323
Cow position: chr12:21075321-21075015 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 139

Conread position: 10-323
Cow position: chr12:21718681-21718998 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 150

Conread position: 10-324
Cow position: chr12:27994592-27994279 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 134

Conread position: 10-326
Cow position: chr12:31828962-31829273 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 28

Conread position: 11-297
Cow position: chr12:21904845-21904563 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 116

Conread position: 11-314
Cow position: chr12:758889-758608 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 152, 27

Conread position: 11-324
Cow position: chr12:1774429-1774740 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 26

Conread position: 11-324
Cow position: chr12:30687227-30686920 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 37

Conread position: 12-321
Cow position: chr12:1093386-1093082 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 114

Conread position: 12-324
Cow position: chr12:8774152-8773845 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 134

Conread position: 15-305
Cow position: chr12:8841574-8841859 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 23, 127

Conread position: 16-203
Cow position: chr12:29485177-29485362 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 43, 126

Conread position: 18-324
Cow position: chr12:21057232-21057528 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 124

Conread position: 19-275
Cow position: chr12:3094145-3094397 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 185
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 144, 18

Conread position: 21-333
Cow position: chr12:26869779-26870087 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 125

Conread position: 22-305
Cow position: chr12:12177765-12178039 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 141, 119

Conread position: 22-308
Cow position: chr12:31260933-31261216 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 125

Conread position: 22-314
Cow position: chr12:19852729-19852447 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 55

Conread position: 22-324
Cow position: chr12:12754681-12754978 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 24-319
Cow position: chr12:3070332-3070040 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 123

Conread position: 26-193
Cow position: chr12:9894450-9894614 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 9, 46

Conread position: 26-222
Cow position: chr12:45540866-45540673 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 136, 115

Conread position: 26-264
Cow position: chr12:23441467-23441702 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 137, 121

Conread position: 40-222
Cow position: chr12:10490306-10490129 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 145
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 123, 82

Conread position: 40-315
Cow position: chr12:15760499-15760225 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 123, 99

Conread position: 40-323
Cow position: chr12:1476204-1476482 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 103

Conread position: 40-326
Cow position: chr12:61749-62031 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 107

Conread position: 40-326
Cow position: chr12:33925239-33925521 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 107

Conread position: 46-343
Cow position: chr12:23099593-23099889 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 199
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 117, 95

Conread position: 47-326
Cow position: chr12:36213729-36213454 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 100

Conread position: 49-250
Cow position: chr12:1345527-1345324 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 87, 0

Conread position: 55-343
Cow position: chr12:21888599-21888882 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 89

Conread position: 61-324
Cow position: chr12:35311471-35311733 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 201
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 90, 147

Conread position: 62-323
Cow position: chr12:23294669-23294414 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 63-324
Cow position: chr12:2242555-2242809 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 39

Conread position: 68-326
Cow position: chr12:32339826-32340080 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 79

Conread position: 75-324
Cow position: chr12:42856108-42856353 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 54

Conread position: 78-324
Cow position: chr12:27929369-27929613 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 71

Conread position: 78-326
Cow position: chr12:6105934-6106172 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 85, 69

Conread position: 80-316
Cow position: chr12:7961328-7961558 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 61

Conread position: 84-323
Cow position: chr12:15797329-15797105 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 79, 59

Conread position: 86-315
Cow position: chr12:21089527-21089753 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 77, 64

Conread position: 91-308
Cow position: chr12:1108518-1108316 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 86, 17

Conread position: 91-324
Cow position: chr12:42795322-42795099 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 72, 36

Conread position: 92-326
Cow position: chr12:21862031-21862247 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 72, 42

Conread position: 94-291
Cow position: chr12:39283112-39283307 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 155
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 69, 39

Conread position: 94-324
Cow position: chr12:23378533-23378310 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 69, 53

Conread position: 113-401
Cow position: chr12:18936214-18935934 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 31

Conread position: 116-326
Cow position: chr12:41595604-41595399 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 28

Conread position: 145-324
Cow position: chr12:42232667-42232488 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 147
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 18, 173

Conread position: 145-343
Cow position: chr12:8674709-8674905 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 155
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 18, 87

Conread position: 146-292
Cow position: chr12:21672709-21672562 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 17, 0

Conread position: 149-326
Cow position: chr12:43601903-43602080 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 144
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 14, 169

Conread position: 164-307
Cow position: chr12:12732515-12732649 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 66, 0

Show alignments to all cow chromosomes.