Cow genome map


           Conread name:
           mH0-MI-P-HO-afz-d-08-1-UM.s1
        

               Conread position:
               1-171
               

               Cow position:
               chr23:14738400-14738229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               29, 136
               

               Conread position:
               1-180
               

               Cow position:
               chr23:33233821-33234001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               20, 149
               

               Conread position:
               1-222
               

               Cow position:
               chr23:7293683-7293466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1-228
               

               Cow position:
               chr23:14839690-14839914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               19, 141
               

               Conread position:
               1-232
               

               Cow position:
               chr23:29471811-29472040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 141
               

               Conread position:
               1-242
               

               Cow position:
               chr23:11405185-11405424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               19, 125
               

               Conread position:
               1-292
               

               Cow position:
               chr23:25670278-25670571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               61, 34
               

               Conread position:
               1-298
               

               Cow position:
               chr23:1321896-1322191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               28, 143
               

               Conread position:
               1-300
               

               Cow position:
               chr23:40825299-40825002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 140
               

               Conread position:
               1-302
               

               Cow position:
               chr23:40890274-40889974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               21, 64
               

               Conread position:
               1-309
               

               Cow position:
               chr23:4437118-4436812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 74
               

               Conread position:
               1-314
               

               Cow position:
               chr23:20025433-20025121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 142
               

               Conread position:
               1-315
               

               Cow position:
               chr23:10905376-10905062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               28, 90
               

               Conread position:
               1-316
               

               Cow position:
               chr23:6173524-6173833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 34
               

               Conread position:
               1-316
               

               Cow position:
               chr23:16057191-16056885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 15
               

               Conread position:
               1-323
               

               Cow position:
               chr23:7359956-7359640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               229
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               28, 143
               

               Conread position:
               1-323
               

               Cow position:
               chr23:16999936-16999623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 33
               

               Conread position:
               1-323
               

               Cow position:
               chr23:19637407-19637712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               29, 77
               

               Conread position:
               1-323
               

               Cow position:
               chr23:29447755-29448069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 76
               

               Conread position:
               1-323
               

               Cow position:
               chr23:30243987-30243681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               28, 142
               

               Conread position:
               1-324
               

               Cow position:
               chr23:416421-416106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               15, 57
               

               Conread position:
               1-324
               

               Cow position:
               chr23:1535619-1535304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 62
               

               Conread position:
               1-324
               

               Cow position:
               chr23:5870908-5871218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 96
               

               Conread position:
               1-324
               

               Cow position:
               chr23:14970454-14970773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 143
               

               Conread position:
               1-324
               

               Cow position:
               chr23:17404110-17403791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               161, 34
               

               Conread position:
               1-324
               

               Cow position:
               chr23:20170710-20171023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               230
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               112, 33
               

               Conread position:
               1-324
               

               Cow position:
               chr23:25554094-25553770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 137
               

               Conread position:
               1-324
               

               Cow position:
               chr23:36308706-36308391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 129
               

               Conread position:
               1-326
               

               Cow position:
               chr23:2180353-2180670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 58
               

               Conread position:
               1-326
               

               Cow position:
               chr23:25357847-25357522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 147
               

               Conread position:
               1-327
               

               Cow position:
               chr23:11814362-11814667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               20, 91
               

               Conread position:
               1-343
               

               Cow position:
               chr23:4517030-4516701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 140
               

               Conread position:
               1-345
               

               Cow position:
               chr23:24120055-24119713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 146
               

               Conread position:
               2-309
               

               Cow position:
               chr23:29446451-29446752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 13
               

               Conread position:
               2-311
               

               Cow position:
               chr23:40371863-40372164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               161, 30
               

               Conread position:
               2-343
               

               Cow position:
               chr23:4809543-4809192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               161, 101
               

               Conread position:
               3-133
               

               Cow position:
               chr23:2721220-2721087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               3-205
               

               Cow position:
               chr23:615917-616120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               26, 140
               

               Conread position:
               3-324
               

               Cow position:
               chr23:2472803-2473122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 148
               

               Conread position:
               3-326
               

               Cow position:
               chr23:3709897-3709581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 98
               

               Conread position:
               6-133
               

               Cow position:
               chr23:15569057-15568927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               100
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               6-144
               

               Cow position:
               chr23:5539641-5539784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               6-173
               

               Cow position:
               chr23:40710416-40710249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               18, 140
               

               Conread position:
               6-187
               

               Cow position:
               chr23:28084650-28084469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               18, 136
               

               Conread position:
               6-196
               

               Cow position:
               chr23:25370402-25370587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               6-196
               

               Cow position:
               chr23:25412006-25412195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               22, 137
               

               Conread position:
               6-213
               

               Cow position:
               chr23:26230625-26230418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               23, 128
               

               Conread position:
               6-217
               

               Cow position:
               chr23:5458234-5458023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               18, 136
               

               Conread position:
               6-222
               

               Cow position:
               chr23:4581521-4581305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               18, 140
               

               Conread position:
               6-223
               

               Cow position:
               chr23:10674790-10674573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               18, 136
               

               Conread position:
               6-224
               

               Cow position:
               chr23:1113447-1113229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               18, 136
               

               Conread position:
               6-232
               

               Cow position:
               chr23:19056866-19057083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               157, 35
               

               Conread position:
               6-233
               

               Cow position:
               chr23:39389564-39389337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               31, 136
               

               Conread position:
               6-245
               

               Cow position:
               chr23:15020413-15020173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               18, 156
               

               Conread position:
               6-254
               

               Cow position:
               chr23:9267367-9267615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               18, 136
               

               Conread position:
               6-273
               

               Cow position:
               chr23:4266931-4266664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 136
               

               Conread position:
               6-288
               

               Cow position:
               chr23:2528901-2529183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 144
               

               Conread position:
               6-302
               

               Cow position:
               chr23:17876385-17876679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               14, 72
               

               Conread position:
               6-309
               

               Cow position:
               chr23:2370510-2370218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               224, 31
               

               Conread position:
               6-316
               

               Cow position:
               chr23:8290949-8290646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 138
               

               Conread position:
               6-316
               

               Cow position:
               chr23:24098623-24098313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 144
               

               Conread position:
               6-316
               

               Cow position:
               chr23:28306340-28306027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 136
               

               Conread position:
               6-316
               

               Cow position:
               chr23:39745355-39745049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 144
               

               Conread position:
               6-322
               

               Cow position:
               chr23:1337994-1338310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 142
               

               Conread position:
               6-322
               

               Cow position:
               chr23:23192941-23193247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               19, 73
               

               Conread position:
               6-323
               

               Cow position:
               chr23:30634102-30634415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 133
               

               Conread position:
               6-324
               

               Cow position:
               chr23:1048361-1048695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 328
               

               Conread position:
               6-324
               

               Cow position:
               chr23:2023593-2023906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 29
               

               Conread position:
               6-324
               

               Cow position:
               chr23:2408720-2409033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 91
               

               Conread position:
               6-324
               

               Cow position:
               chr23:2761393-2761077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 144
               

               Conread position:
               6-324
               

               Cow position:
               chr23:2791278-2791584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 138
               

               Conread position:
               6-324
               

               Cow position:
               chr23:4892191-4891874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 135
               

               Conread position:
               6-324
               

               Cow position:
               chr23:5624084-5624394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 112
               

               Conread position:
               6-324
               

               Cow position:
               chr23:11343988-11343675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 29
               

               Conread position:
               6-324
               

               Cow position:
               chr23:11376822-11377139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 144
               

               Conread position:
               6-324
               

               Cow position:
               chr23:11782281-11781963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 144
               

               Conread position:
               6-324
               

               Cow position:
               chr23:14959462-14959773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 136
               

               Conread position:
               6-324
               

               Cow position:
               chr23:15180453-15180137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 129
               

               Conread position:
               6-324
               

               Cow position:
               chr23:15529082-15528765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 144
               

               Conread position:
               6-324
               

               Cow position:
               chr23:20152725-20153043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 140
               

               Conread position:
               6-324
               

               Cow position:
               chr23:26828744-26828431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 136
               

               Conread position:
               6-324
               

               Cow position:
               chr23:28915823-28915511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 120
               

               Conread position:
               6-324
               

               Cow position:
               chr23:36027757-36028074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 136
               

               Conread position:
               6-324
               

               Cow position:
               chr23:37199015-37199335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 144
               

               Conread position:
               6-326
               

               Cow position:
               chr23:671667-671348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 144
               

               Conread position:
               6-326
               

               Cow position:
               chr23:2320455-2320768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 95
               

               Conread position:
               6-326
               

               Cow position:
               chr23:3286254-3285935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 142
               

               Conread position:
               6-326
               

               Cow position:
               chr23:3302350-3302031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 142
               

               Conread position:
               6-326
               

               Cow position:
               chr23:3549700-3550018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 79
               

               Conread position:
               6-326
               

               Cow position:
               chr23:4532211-4532521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 26
               

               Conread position:
               6-326
               

               Cow position:
               chr23:4636856-4637179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 148
               

               Conread position:
               6-326
               

               Cow position:
               chr23:5441412-5441094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 144
               

               Conread position:
               6-326
               

               Cow position:
               chr23:8707886-8707567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 144
               

               Conread position:
               6-326
               

               Cow position:
               chr23:10679338-10679657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 144
               

               Conread position:
               6-326
               

               Cow position:
               chr23:10936801-10937126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 136
               

               Conread position:
               6-326
               

               Cow position:
               chr23:11070575-11070253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 143
               

               Conread position:
               6-326
               

               Cow position:
               chr23:16495781-16496099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 138
               

               Conread position:
               6-326
               

               Cow position:
               chr23:21351460-21351772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 66
               

               Conread position:
               6-326
               

               Cow position:
               chr23:21772414-21772734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 143
               

               Conread position:
               6-326
               

               Cow position:
               chr23:25351855-25351536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 144
               

               Conread position:
               6-326
               

               Cow position:
               chr23:29043278-29042959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 135
               

               Conread position:
               6-326
               

               Cow position:
               chr23:31605923-31605604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 144
               

               Conread position:
               6-326
               

               Cow position:
               chr23:31704390-31704071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 144
               

               Conread position:
               6-326
               

               Cow position:
               chr23:31771775-31772090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 77
               

               Conread position:
               6-326
               

               Cow position:
               chr23:38934739-38935038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 136
               

               Conread position:
               6-326
               

               Cow position:
               chr23:40773823-40773506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 67
               

               Conread position:
               6-326
               

               Cow position:
               chr23:41015424-41015105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 144
               

               Conread position:
               6-331
               

               Cow position:
               chr23:27402629-27402308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 136
               

               Conread position:
               6-348
               

               Cow position:
               chr23:11079880-11079538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 136
               

               Conread position:
               7-133
               

               Cow position:
               chr23:27365132-27365003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               7-305
               

               Cow position:
               chr23:29625472-29625170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               22, 136
               

               Conread position:
               7-323
               

               Cow position:
               chr23:1398742-1399034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               156, 27
               

               Conread position:
               7-324
               

               Cow position:
               chr23:1959621-1959305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 143
               

               Conread position:
               7-324
               

               Cow position:
               chr23:22170401-22170086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 137
               

               Conread position:
               7-324
               

               Cow position:
               chr23:28222196-28221879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 143
               

               Conread position:
               7-324
               

               Cow position:
               chr23:38584408-38584098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               132, 27
               

               Conread position:
               7-326
               

               Cow position:
               chr23:22143816-22144133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 139
               

               Conread position:
               7-326
               

               Cow position:
               chr23:27313339-27313021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 143
               

               Conread position:
               8-212
               

               Cow position:
               chr23:35937307-35937110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               155, 36
               

               Conread position:
               8-322
               

               Cow position:
               chr23:31833517-31833819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 11
               

               Conread position:
               8-326
               

               Cow position:
               chr23:954307-954620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 141
               

               Conread position:
               8-326
               

               Cow position:
               chr23:14215741-14216048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 130
               

               Conread position:
               9-213
               

               Cow position:
               chr23:39108328-39108531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               28, 115
               

               Conread position:
               9-323
               

               Cow position:
               chr23:6593449-6593745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               9-324
               

               Cow position:
               chr23:1311078-1311395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 135
               

               Conread position:
               9-324
               

               Cow position:
               chr23:11128506-11128197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 28
               

               Conread position:
               9-324
               

               Cow position:
               chr23:30623009-30623319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 136
               

               Conread position:
               9-324
               

               Cow position:
               chr23:34347365-34347052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 25
               

               Conread position:
               9-326
               

               Cow position:
               chr23:28987834-28987519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 141
               

               Conread position:
               9-331
               

               Cow position:
               chr23:1010065-1010373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 52
               

               Conread position:
               10-316
               

               Cow position:
               chr23:17846482-17846183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 122
               

               Conread position:
               10-326
               

               Cow position:
               chr23:14265831-14265523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 129
               

               Conread position:
               11-275
               

               Cow position:
               chr23:20541453-20541202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 26
               

               Conread position:
               11-287
               

               Cow position:
               chr23:40553632-40553909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 139
               

               Conread position:
               11-301
               

               Cow position:
               chr23:12864189-12863905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               14, 136
               

               Conread position:
               11-323
               

               Cow position:
               chr23:3877658-3877963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 61
               

               Conread position:
               11-324
               

               Cow position:
               chr23:19493338-19493027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 138
               

               Conread position:
               12-204
               

               Cow position:
               chr23:6223301-6223115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               45, 25
               

               Conread position:
               13-323
               

               Cow position:
               chr23:21277158-21277455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 21
               

               Conread position:
               16-321
               

               Cow position:
               chr23:5882786-5882488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               207
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               5, 125
               

               Conread position:
               17-326
               

               Cow position:
               chr23:11078759-11078454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 116
               

               Conread position:
               19-331
               

               Cow position:
               chr23:9193422-9193723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               10, 28
               

               Conread position:
               20-182
               

               Cow position:
               chr23:16610921-16611079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               145, 14
               

               Conread position:
               22-300
               

               Cow position:
               chr23:12978230-12977949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 119
               

               Conread position:
               22-326
               

               Cow position:
               chr23:5396103-5396404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 126
               

               Conread position:
               24-128
               

               Cow position:
               chr23:25676648-25676752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               105
               

               Alignm identity:
               85
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               25-324
               

               Cow position:
               chr23:10424401-10424116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               10, 106
               

               Conread position:
               29-323
               

               Cow position:
               chr23:1325846-1326133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 112
               

               Conread position:
               34-194
               

               Cow position:
               chr23:35929400-35929241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               61, 106
               

               Conread position:
               35-323
               

               Cow position:
               chr23:771028-771312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 112
               

               Conread position:
               42-323
               

               Cow position:
               chr23:20389565-20389842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               46-324
               

               Cow position:
               chr23:33817899-33817623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               208
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               117, 22
               

               Conread position:
               47-323
               

               Cow position:
               chr23:29459802-29460072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 92
               

               Conread position:
               47-326
               

               Cow position:
               chr23:15215386-15215658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 100
               

               Conread position:
               49-326
               

               Cow position:
               chr23:32007944-32008200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               56-326
               

               Cow position:
               chr23:35281078-35281343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               107, 65
               

               Conread position:
               62-302
               

               Cow position:
               chr23:2532079-2532309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               101, 28
               

               Conread position:
               80-326
               

               Cow position:
               chr23:11712248-11712491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               192
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               83, 59
               

               Conread position:
               94-258
               

               Cow position:
               chr23:3489645-3489804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               103-326
               

               Cow position:
               chr23:3730190-3730409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               60, 44
               

               Conread position:
               146-326
               

               Cow position:
               chr23:2369170-2368986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               146, 18
               

               Conread position:
               151-326
               

               Cow position:
               chr23:29935625-29935450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               74, 167
               

               Conread position:
               164-326
               

               Cow position:
               chr23:15567669-15567830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               166-326
               

               Cow position:
               chr23:21008269-21008428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               176-324
               

               Cow position:
               chr23:2737546-2737400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               61, 0
               
Show alignments to all cow chromosomes.