Cow genome map

Conread name: mH1-MI-P-H1-afo-h-06-1-UM.s1

Conread position: 132-527
Cow position: chrX:43437321-43437734 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 269
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 47, 42

Conread position: 134-368
Cow position: chrX:38963133-38963376 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 40

Conread position: 134-438
Cow position: chrX:20366591-20366904 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 103, 19

Conread position: 134-439
Cow position: chrX:29010049-29009745 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 204
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 117, 56

Conread position: 134-502
Cow position: chrX:29891687-29891306 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 238
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 105, 140

Conread position: 134-503
Cow position: chrX:19608257-19607871 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 245
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 39

Conread position: 134-519
Cow position: chrX:2579001-2578605 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 249
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 40

Conread position: 134-519
Cow position: chrX:27317811-27317409 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 260
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 38

Conread position: 134-520
Cow position: chrX:21646700-21647097 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 254
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 37

Conread position: 134-523
Cow position: chrX:12345517-12345112 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 252
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 39

Conread position: 134-523
Cow position: chrX:19398358-19397950 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 258
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 40

Conread position: 134-523
Cow position: chrX:21226061-21225655 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 256
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 40

Conread position: 134-526
Cow position: chrX:2813895-2814306 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 258
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 257

Conread position: 134-526
Cow position: chrX:9010914-9010507 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 261
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 40

Conread position: 134-526
Cow position: chrX:11146756-11147168 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 263
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 40

Conread position: 134-526
Cow position: chrX:11462413-11462822 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 262
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 105, 190

Conread position: 134-526
Cow position: chrX:12308182-12308592 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 259
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 40

Conread position: 134-526
Cow position: chrX:14597437-14597027 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 261
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 38

Conread position: 134-526
Cow position: chrX:15992891-15992502 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 251
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 126, 44

Conread position: 134-526
Cow position: chrX:16045552-16045142 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 263
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 45, 38

Conread position: 134-526
Cow position: chrX:22818655-22818247 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 261
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 45, 40

Conread position: 134-526
Cow position: chrX:23279607-23279198 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 261
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 103, 161

Conread position: 134-526
Cow position: chrX:24770276-24770684 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 262
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 40

Conread position: 134-526
Cow position: chrX:29171200-29171609 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 257
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 40

Conread position: 134-526
Cow position: chrX:35532436-35532030 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 257
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 40

Conread position: 134-527
Cow position: chrX:2560367-2560775 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 255
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:3082563-3082963 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 256
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 107, 34

Conread position: 134-527
Cow position: chrX:3418636-3419048 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 258
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 107, 257

Conread position: 134-527
Cow position: chrX:5281202-5281609 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 255
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 107, 302

Conread position: 134-527
Cow position: chrX:5321131-5321542 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 267
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:10867269-10867676 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 260
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 39

Conread position: 134-527
Cow position: chrX:13244239-13243828 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 263
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 45, 38

Conread position: 134-527
Cow position: chrX:13929153-13929560 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 260
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:15978371-15978782 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 263
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:17054151-17053734 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 271
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:18221993-18221589 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 258
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 41

Conread position: 134-527
Cow position: chrX:18657224-18657631 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 259
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 40

Conread position: 134-527
Cow position: chrX:19474568-19474978 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 265
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:20357419-20357830 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 264
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 38

Conread position: 134-527
Cow position: chrX:20725551-20725143 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 262
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:21767213-21766802 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 264
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:22565104-22565515 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 261
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:23387967-23388377 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 263
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:23395187-23394778 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 261
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 105, 253

Conread position: 134-527
Cow position: chrX:23453472-23453882 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 263
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 20

Conread position: 134-527
Cow position: chrX:23573227-23573631 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 251
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:28587562-28587151 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 254
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 39

Conread position: 134-527
Cow position: chrX:28753756-28754167 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 267
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:29094734-29095145 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 262
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:29911915-29911508 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 261
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:30181344-30181755 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 254
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 46, 40

Conread position: 134-527
Cow position: chrX:30437488-30437077 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 262
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:32064587-32064992 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 257
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 40

Conread position: 134-527
Cow position: chrX:36536149-36536556 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 260
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 38

Conread position: 134-527
Cow position: chrX:37814731-37814320 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 259
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 38

Conread position: 134-529
Cow position: chrX:730981-731387 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 263
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 99, 82

Conread position: 134-529
Cow position: chrX:18899242-18899637 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 256
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 106, 19

Conread position: 134-531
Cow position: chrX:8482032-8481621 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 261
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 38

Conread position: 134-535
Cow position: chrX:15990823-15991231 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 251
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 192, 112

Conread position: 134-536
Cow position: chrX:20741048-20741466 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 262
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 28

Conread position: 135-529
Cow position: chrX:17891122-17890715 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 265
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 39

Conread position: 137-507
Cow position: chrX:27645633-27645252 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 100, 191

Conread position: 137-526
Cow position: chrX:2047663-2047262 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 253
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 42, 35

Conread position: 137-526
Cow position: chrX:9095220-9094817 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 262
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 37

Conread position: 137-527
Cow position: chrX:7120072-7119662 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 259
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 42, 37

Conread position: 137-527
Cow position: chrX:7754484-7754076 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 258
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 36

Conread position: 137-527
Cow position: chrX:41687191-41686788 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 267
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 104, 181

Conread position: 138-410
Cow position: chrX:29228014-29227730 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 117, 105

Conread position: 138-501
Cow position: chrX:23236468-23236095 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 243
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 103, 153

Conread position: 138-519
Cow position: chrX:7175324-7174941 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 258
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 178, 105

Conread position: 139-522
Cow position: chrX:14217549-14217933 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 100, 154

Conread position: 139-529
Cow position: chrX:26341625-26342015 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 250
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 106, 62

Conread position: 140-529
Cow position: chrX:387711-387306 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 265
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 100, 57

Conread position: 141-532
Cow position: chrX:30090461-30090850 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 257
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 33

Conread position: 146-527
Cow position: chrX:31495308-31494906 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 261
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 28

Conread position: 147-527
Cow position: chrX:34093259-34093657 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 251
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 27

Conread position: 148-410
Cow position: chrX:4157503-4157773 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 104, 251

Conread position: 162-519
Cow position: chrX:164459-164102 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 236
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 167, 33

Conread position: 167-357
Cow position: chrX:23959532-23959345 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 51

Conread position: 173-534
Cow position: chrX:22126234-22126603 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 243
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 56, 14

Conread position: 181-508
Cow position: chrX:12999973-13000296 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 215
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 164, 75

Conread position: 186-529
Cow position: chrX:20512038-20512389 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 236
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 62, 33

Conread position: 195-529
Cow position: chrX:515028-514684 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 231
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 63, 41

Conread position: 238-529
Cow position: chrX:22076456-22076760 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 204
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 13, 169

Conread position: 331-535
Cow position: chrX:23959346-23959139 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 127

Show alignments to all cow chromosomes.