Cow genome map

Conread name: mO3-MI-P-O3-aav-c-06-1-UM.s1

Conread position: 1-394
Cow position: chr22:10330701-10330319 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 71

Conread position: 1-411
Cow position: chr22:26089670-26090094 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 11

Conread position: 2-410
Cow position: chr22:18603246-18603668 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 32

Conread position: 3-189
Cow position: chr22:34894113-34893918 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 26, 17

Conread position: 3-200
Cow position: chr22:22563233-22563027 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 30, 9

Conread position: 3-201
Cow position: chr22:556768-556970 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 30, 9

Conread position: 3-218
Cow position: chr22:22278653-22278432 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 83, 9

Conread position: 3-218
Cow position: chr22:36254453-36254229 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 9

Conread position: 3-221
Cow position: chr22:19712825-19713052 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 9

Conread position: 3-242
Cow position: chr22:14845198-14845446 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 9

Conread position: 3-243
Cow position: chr22:1325776-1325524 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 30, 15

Conread position: 3-246
Cow position: chr22:3941621-3941369 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 30, 9

Conread position: 3-254
Cow position: chr22:11643367-11643627 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 30, 9

Conread position: 3-274
Cow position: chr22:28996745-28997025 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 9

Conread position: 3-275
Cow position: chr22:31593701-31593984 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 30, 15

Conread position: 3-282
Cow position: chr22:27385992-27386280 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 9

Conread position: 3-301
Cow position: chr22:102486-102178 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 30, 9

Conread position: 3-317
Cow position: chr22:37032320-37032635 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 14

Conread position: 3-325
Cow position: chr22:8417814-8417483 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-325
Cow position: chr22:45106566-45106892 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 15

Conread position: 3-330
Cow position: chr22:39038814-39039156 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 242
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 30, 9

Conread position: 3-335
Cow position: chr22:9285178-9285520 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-335
Cow position: chr22:36571974-36572318 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 15

Conread position: 3-337
Cow position: chr22:20087927-20087588 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 224
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 30, 17

Conread position: 3-366
Cow position: chr22:15942168-15942542 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 251
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 24, 9

Conread position: 3-367
Cow position: chr22:981886-981509 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-376
Cow position: chr22:32951795-32951418 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 15

Conread position: 3-380
Cow position: chr22:8773441-8773832 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-380
Cow position: chr22:15953446-15953826 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-383
Cow position: chr22:11837858-11838248 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-384
Cow position: chr22:9728432-9728803 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-384
Cow position: chr22:35934406-35934798 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-384
Cow position: chr22:45013420-45013803 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 9

Conread position: 3-385
Cow position: chr22:14807818-14807431 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-385
Cow position: chr22:18233432-18233043 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 9

Conread position: 3-385
Cow position: chr22:19822755-19822360 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-385
Cow position: chr22:29397644-29397253 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-385
Cow position: chr22:29464450-29464060 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 9

Conread position: 3-385
Cow position: chr22:39443460-39443836 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 277
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 30, 9

Conread position: 3-385
Cow position: chr22:41271647-41272033 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-385
Cow position: chr22:44382289-44381894 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-386
Cow position: chr22:1310378-1310773 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 16

Conread position: 3-395
Cow position: chr22:2415455-2415056 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-396
Cow position: chr22:14509963-14510360 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 3-396
Cow position: chr22:19048217-19048613 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-396
Cow position: chr22:26759526-26759122 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 278
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 30, 15

Conread position: 3-396
Cow position: chr22:32019003-32019402 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 15

Conread position: 3-396
Cow position: chr22:32811648-32812053 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 9

Conread position: 3-396
Cow position: chr22:36503144-36503544 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-396
Cow position: chr22:45845454-45845056 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 15

Conread position: 3-396
Cow position: chr22:46439762-46440160 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 266
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 25, 15

Conread position: 3-397
Cow position: chr22:33901735-33902148 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-398
Cow position: chr22:43261426-43261021 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 3-399
Cow position: chr22:7156204-7155811 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-399
Cow position: chr22:8733968-8734377 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 290
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 33, 15

Conread position: 3-399
Cow position: chr22:13897196-13896795 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 17

Conread position: 3-399
Cow position: chr22:14490698-14490292 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 259
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 31

Conread position: 3-399
Cow position: chr22:15057839-15057435 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 3-399
Cow position: chr22:17324938-17325346 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 8

Conread position: 3-399
Cow position: chr22:26167236-26167634 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 278
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 33, 17

Conread position: 3-399
Cow position: chr22:27306400-27306810 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-399
Cow position: chr22:29855414-29855003 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-399
Cow position: chr22:32210176-32209765 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-399
Cow position: chr22:33951397-33951798 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-399
Cow position: chr22:34172014-34171604 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-399
Cow position: chr22:34608035-34607643 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 275
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 69, 17

Conread position: 3-399
Cow position: chr22:35909922-35910334 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 9

Conread position: 3-399
Cow position: chr22:36188606-36188205 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 9

Conread position: 3-399
Cow position: chr22:37323827-37323423 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 15

Conread position: 3-399
Cow position: chr22:40373949-40373546 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 3-399
Cow position: chr22:40828503-40828914 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-399
Cow position: chr22:41846005-41846411 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-399
Cow position: chr22:41971991-41972384 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 282
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 30, 15

Conread position: 3-400
Cow position: chr22:13696362-13696772 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-405
Cow position: chr22:15920281-15920682 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-405
Cow position: chr22:43279919-43280333 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-406
Cow position: chr22:46578143-46578557 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr22:3433399-3433820 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr22:5015641-5015230 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-410
Cow position: chr22:6340212-6339797 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 9

Conread position: 3-410
Cow position: chr22:12225343-12225753 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 9

Conread position: 3-410
Cow position: chr22:12728103-12728518 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-410
Cow position: chr22:15308398-15308820 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr22:15858343-15857920 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-410
Cow position: chr22:18807670-18808089 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr22:19140142-19140562 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 3-410
Cow position: chr22:28785675-28785262 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr22:31331308-31331729 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr22:36208262-36207849 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-410
Cow position: chr22:37290290-37290699 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr22:39464977-39465398 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:540699-540277 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:3274793-3275215 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:3807238-3806827 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 295

Conread position: 3-411
Cow position: chr22:8776154-8776576 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:8881700-8881288 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 3-411
Cow position: chr22:9269763-9269340 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:10550430-10550008 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:10906646-10907063 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:11988155-11988564 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 3-411
Cow position: chr22:15013129-15013547 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:20237010-20237432 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:20569478-20569899 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:21192650-21193060 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:22107606-22107185 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:22607722-22607300 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:23864372-23863956 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-411
Cow position: chr22:25240968-25241384 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:25336715-25336293 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:30675173-30675585 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:30963454-30963043 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 15

Conread position: 3-411
Cow position: chr22:32221005-32220602 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 282
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 30, 15

Conread position: 3-411
Cow position: chr22:32944012-32943590 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:33200835-33200423 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 15

Conread position: 3-411
Cow position: chr22:39902945-39902523 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr22:45281505-45281091 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 9

Conread position: 3-412
Cow position: chr22:30918631-30918231 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 127

Conread position: 3-416
Cow position: chr22:44365646-44366073 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 9

Conread position: 4-189
Cow position: chr22:9277350-9277167 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 117, 16

Conread position: 4-406
Cow position: chr22:697495-697079 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 8

Conread position: 5-203
Cow position: chr22:31212924-31212721 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 13

Conread position: 5-280
Cow position: chr22:1591595-1591313 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 73, 7

Conread position: 5-301
Cow position: chr22:22663516-22663822 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 28, 7

Conread position: 5-399
Cow position: chr22:31316101-31315697 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 7

Conread position: 5-399
Cow position: chr22:33448744-33449131 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 148

Conread position: 7-385
Cow position: chr22:11754093-11754473 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 5

Conread position: 7-395
Cow position: chr22:2560914-2561313 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 5

Conread position: 7-405
Cow position: chr22:21592983-21592571 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 5

Conread position: 7-410
Cow position: chr22:19600241-19600658 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 5

Conread position: 12-399
Cow position: chr22:52066-51666 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 201

Conread position: 12-410
Cow position: chr22:1517485-1517899 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 12-411
Cow position: chr22:15174516-15174930 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 12-411
Cow position: chr22:36785252-36784856 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 135

Conread position: 13-399
Cow position: chr22:11767285-11767651 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 271
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 20, 179

Conread position: 14-411
Cow position: chr22:24817211-24817619 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 371

Conread position: 15-411
Cow position: chr22:25340700-25340295 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 163

Conread position: 16-399
Cow position: chr22:47957724-47958105 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 20

Conread position: 17-399
Cow position: chr22:30092340-30091958 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 271
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 18, 55

Conread position: 19-335
Cow position: chr22:28714448-28714121 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 81

Conread position: 20-396
Cow position: chr22:44924785-44925169 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 263
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 12, 99

Conread position: 20-405
Cow position: chr22:13721197-13721583 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 21

Conread position: 25-385
Cow position: chr22:533630-533270 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 6

Conread position: 25-411
Cow position: chr22:8299679-8299288 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 6

Conread position: 28-385
Cow position: chr22:14817104-14817471 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 256
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 44, 161

Conread position: 32-344
Cow position: chr22:23582281-23582601 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 51, 0

Conread position: 33-229
Cow position: chr22:3303102-3303301 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 56, 0

Conread position: 33-325
Cow position: chr22:29553652-29553951 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 125

Conread position: 34-396
Cow position: chr22:29955673-29956033 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 52

Conread position: 36-410
Cow position: chr22:41946188-41946572 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 87

Conread position: 49-395
Cow position: chr22:28178465-28178107 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 270

Conread position: 53-399
Cow position: chr22:31598818-31598462 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 239
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 5, 123

Conread position: 64-385
Cow position: chr22:42994671-42994342 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 84

Conread position: 64-411
Cow position: chr22:3065302-3065658 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 64-411
Cow position: chr22:10576987-10577346 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 33

Conread position: 66-394
Cow position: chr22:31306728-31306404 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 158

Conread position: 69-385
Cow position: chr22:9147889-9147568 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 217
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 112

Conread position: 69-396
Cow position: chr22:12868966-12869299 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 31

Conread position: 69-410
Cow position: chr22:40386124-40385781 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 92

Conread position: 78-379
Cow position: chr22:18122310-18122603 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 19, 134

Conread position: 79-396
Cow position: chr22:27223359-27223680 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 224
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 38, 82

Conread position: 82-337
Cow position: chr22:5836024-5835768 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 106

Conread position: 82-399
Cow position: chr22:17781473-17781799 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 37, 49

Conread position: 82-411
Cow position: chr22:699418-699087 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 9

Conread position: 89-411
Cow position: chr22:9371828-9371500 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 174

Conread position: 100-396
Cow position: chr22:11779313-11779610 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 20, 31

Conread position: 100-399
Cow position: chr22:26104679-26104985 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 114-399
Cow position: chr22:288191-288478 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 72, 187

Conread position: 114-411
Cow position: chr22:12968962-12969262 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 83

Conread position: 117-366
Cow position: chr22:1080329-1080080 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 5, 158

Conread position: 123-411
Cow position: chr22:34758626-34758921 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 127-378
Cow position: chr22:33387345-33387591 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 156, 47

Conread position: 128-385
Cow position: chr22:7231353-7231096 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 168
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 155, 31

Conread position: 129-377
Cow position: chr22:36584205-36584452 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 153, 94

Conread position: 146-399
Cow position: chr22:5312335-5312593 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 143, 0

Conread position: 146-399
Cow position: chr22:13185216-13184962 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 184, 116

Conread position: 153-410
Cow position: chr22:6202067-6202323 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 93

Conread position: 162-396
Cow position: chr22:36543085-36543313 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 120, 12

Conread position: 168-399
Cow position: chr22:40326679-40326449 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 121, 6

Conread position: 176-411
Cow position: chr22:46568707-46568947 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 113, 0

Conread position: 179-411
Cow position: chr22:43236216-43235979 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 187-405
Cow position: chr22:18195067-18194848 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 98, 207

Conread position: 193-399
Cow position: chr22:42500001-42500212 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 96, 0

Conread position: 195-394
Cow position: chr22:557340-557545 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 90, 0

Conread position: 195-411
Cow position: chr22:3714140-3714361 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 196-390
Cow position: chr22:1280297-1280486 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 87, 42

Conread position: 200-414
Cow position: chr22:46022278-46022060 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 11, 117

Conread position: 204-398
Cow position: chr22:11698254-11698453 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 84, 0

Conread position: 217-350
Cow position: chr22:46387127-46386990 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 233-411
Cow position: chr22:30189699-30189510 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 237-399
Cow position: chr22:1483734-1483567 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 241-411
Cow position: chr22:3303346-3303520 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 244-398
Cow position: chr22:44494555-44494397 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 45, 56

Conread position: 248-399
Cow position: chr22:6498390-6498547 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 253-396
Cow position: chr22:5334238-5334387 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 256-399
Cow position: chr22:5452954-5452806 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 258-411
Cow position: chr22:13768602-13768447 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 69

Show alignments to all cow chromosomes.