Cow genome map

Conread name: mO3-MI-P-O3-aav-c-06-1-UM.s1

Conread position: 3-184
Cow position: chr27:8187390-8187204 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 9

Conread position: 3-200
Cow position: chr27:9989323-9989527 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 9

Conread position: 3-248
Cow position: chr27:2936380-2936130 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 28, 17

Conread position: 3-259
Cow position: chr27:29811859-29811596 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 83, 9

Conread position: 3-263
Cow position: chr27:11490178-11489910 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 30, 15

Conread position: 3-269
Cow position: chr27:19300008-19300284 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 9

Conread position: 3-322
Cow position: chr27:17476664-17476978 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 106, 9

Conread position: 3-350
Cow position: chr27:13182732-13183074 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 3-350
Cow position: chr27:24055240-24054906 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 262
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 30, 9

Conread position: 3-385
Cow position: chr27:15033334-15033728 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 9

Conread position: 3-385
Cow position: chr27:24295702-24296106 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-385
Cow position: chr27:25800653-25801042 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-390
Cow position: chr27:12282242-12281848 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 92, 15

Conread position: 3-390
Cow position: chr27:15866749-15867137 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 3-390
Cow position: chr27:21350405-21350008 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 15

Conread position: 3-396
Cow position: chr27:2682080-2681674 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-396
Cow position: chr27:9333225-9332827 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-396
Cow position: chr27:9970729-9970322 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-396
Cow position: chr27:11481489-11481083 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-396
Cow position: chr27:27557356-27556957 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 17

Conread position: 3-396
Cow position: chr27:30036436-30036020 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 3-397
Cow position: chr27:2557436-2557843 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 9

Conread position: 3-398
Cow position: chr27:344372-344776 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 17

Conread position: 3-399
Cow position: chr27:1189214-1188814 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-399
Cow position: chr27:11434720-11434323 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-399
Cow position: chr27:15272516-15272920 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 3-399
Cow position: chr27:15406177-15405776 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 15

Conread position: 3-399
Cow position: chr27:22797101-22797509 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-405
Cow position: chr27:21452004-21451586 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 15

Conread position: 3-405
Cow position: chr27:31268772-31268359 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 266
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 30, 15

Conread position: 3-410
Cow position: chr27:4331181-4331603 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr27:4982918-4982509 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 9

Conread position: 3-410
Cow position: chr27:8427416-8426994 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr27:8973000-8972581 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 9

Conread position: 3-410
Cow position: chr27:13901681-13901261 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 9

Conread position: 3-410
Cow position: chr27:15633785-15634205 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 17

Conread position: 3-410
Cow position: chr27:19523152-19523571 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr27:19931999-19932429 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr27:20810974-20810558 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr27:26785370-26784959 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 15

Conread position: 3-410
Cow position: chr27:27291951-27291526 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-410
Cow position: chr27:27728928-27729350 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 225

Conread position: 3-411
Cow position: chr27:1081618-1082026 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 9

Conread position: 3-411
Cow position: chr27:1521232-1520816 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr27:2001402-2000982 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr27:3653142-3653564 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr27:5983473-5983894 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 9

Conread position: 3-411
Cow position: chr27:10579501-10579083 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr27:12006706-12006284 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr27:13353863-13353442 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr27:16030839-16031261 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr27:29035824-29036244 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-411
Cow position: chr27:30306708-30307133 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 3-413
Cow position: chr27:10383988-10383582 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 289
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 30, 8

Conread position: 4-385
Cow position: chr27:8201493-8201101 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 8

Conread position: 4-410
Cow position: chr27:15349197-15348799 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 87

Conread position: 5-256
Cow position: chr27:13409551-13409288 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 30, 7

Conread position: 5-385
Cow position: chr27:26330488-26330095 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 7

Conread position: 5-399
Cow position: chr27:165364-165771 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 7

Conread position: 5-410
Cow position: chr27:3231982-3232397 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 7

Conread position: 7-362
Cow position: chr27:10306657-10306304 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 15

Conread position: 9-399
Cow position: chr27:27930755-27930356 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 195

Conread position: 12-411
Cow position: chr27:14297757-14297343 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 15-411
Cow position: chr27:2332050-2331638 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 402

Conread position: 21-399
Cow position: chr27:20765270-20764898 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 25, 10

Conread position: 25-201
Cow position: chr27:23454508-23454331 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 6

Conread position: 38-378
Cow position: chr27:25799774-25799427 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 62

Conread position: 45-412
Cow position: chr27:1536684-1536305 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 280

Conread position: 46-410
Cow position: chr27:19423866-19424240 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 14

Conread position: 49-399
Cow position: chr27:1502020-1501673 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 240
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 35, 151

Conread position: 66-385
Cow position: chr27:5914415-5914096 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 55, 24

Conread position: 70-379
Cow position: chr27:14380788-14380473 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 119

Conread position: 78-405
Cow position: chr27:1141174-1140839 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 217
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 11

Conread position: 79-399
Cow position: chr27:21392485-21392160 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 150

Conread position: 86-411
Cow position: chr27:22647165-22647496 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 5

Conread position: 99-411
Cow position: chr27:13309096-13308780 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 9

Conread position: 106-400
Cow position: chr27:27045622-27045326 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 88

Conread position: 109-411
Cow position: chr27:15870577-15870874 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 86

Conread position: 123-397
Cow position: chr27:27279143-27278861 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 125-396
Cow position: chr27:15697770-15697502 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 94

Conread position: 146-380
Cow position: chr27:25971194-25971433 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 139, 87

Conread position: 166-399
Cow position: chr27:25885208-25884975 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 117, 37

Conread position: 169-404
Cow position: chr27:8429388-8429146 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 190

Conread position: 180-411
Cow position: chr27:20001777-20001552 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 109, 135

Conread position: 193-378
Cow position: chr27:9989843-9990033 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 86, 0

Conread position: 216-411
Cow position: chr27:8262105-8261907 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 29

Conread position: 216-411
Cow position: chr27:15544351-15544151 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 243-410
Cow position: chr27:12750334-12750162 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 0

Show alignments to all cow chromosomes.