Cow genome map

Conread name: raor023_p21.y1

Conread position: 1-165
Cow position: chr10:39780434-39780265 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 85, 0

Conread position: 1-165
Cow position: chr10:40425110-40425276 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 86, 153

Conread position: 1-207
Cow position: chr10:42627881-42628096 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 58, 0

Conread position: 1-368
Cow position: chr10:19497529-19497138 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 267
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 84, 374

Conread position: 1-378
Cow position: chr10:28640873-28641276 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 262
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 84, 0

Conread position: 1-380
Cow position: chr10:42735935-42736295 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 124, 51

Conread position: 1-449
Cow position: chr10:21466639-21467112 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 240

Conread position: 1-462
Cow position: chr10:4499126-4499578 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 317
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 39, 32

Conread position: 1-525
Cow position: chr10:49309964-49310467 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 105

Conread position: 1-544
Cow position: chr10:21901763-21901245 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 352
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 220, 29

Conread position: 1-558
Cow position: chr10:24299434-24298888 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 173

Conread position: 1-558
Cow position: chr10:34685326-34685859 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 89

Conread position: 1-558
Cow position: chr10:38546811-38546259 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 171

Conread position: 1-558
Cow position: chr10:61296714-61297292 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 81

Conread position: 1-562
Cow position: chr10:11686271-11685700 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 179

Conread position: 1-562
Cow position: chr10:41566493-41567074 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 36

Conread position: 1-562
Cow position: chr10:60489076-60489627 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 29

Conread position: 1-563
Cow position: chr10:55092499-55093079 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 22

Conread position: 1-564
Cow position: chr10:4192829-4192248 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 289

Conread position: 1-564
Cow position: chr10:14803228-14803804 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 36

Conread position: 1-564
Cow position: chr10:19839559-19840122 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 172

Conread position: 1-564
Cow position: chr10:21401281-21400702 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 240

Conread position: 1-564
Cow position: chr10:21741365-21740782 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 478

Conread position: 1-564
Cow position: chr10:25497781-25498321 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 209

Conread position: 1-564
Cow position: chr10:29695664-29696206 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 52

Conread position: 1-564
Cow position: chr10:37769240-37769792 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 169

Conread position: 1-564
Cow position: chr10:39817959-39817381 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 242

Conread position: 1-564
Cow position: chr10:41156840-41157417 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 240

Conread position: 1-564
Cow position: chr10:51953218-51952636 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 271

Conread position: 1-564
Cow position: chr10:57560163-57559579 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 271

Conread position: 1-564
Cow position: chr10:62216032-62216576 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 53

Conread position: 1-564
Cow position: chr10:62777773-62778315 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 221

Conread position: 2-408
Cow position: chr10:54126881-54127275 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 168

Conread position: 2-564
Cow position: chr10:8289387-8289952 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 171

Conread position: 3-557
Cow position: chr10:31523283-31523790 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 373
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 30, 187

Conread position: 3-564
Cow position: chr10:38539071-38538528 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 170

Conread position: 3-564
Cow position: chr10:39041885-39041336 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 13

Conread position: 4-405
Cow position: chr10:14951148-14951526 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 268
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 289, 145

Conread position: 4-564
Cow position: chr10:62409430-62408886 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 19

Conread position: 8-564
Cow position: chr10:39179184-39179753 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 233

Conread position: 8-564
Cow position: chr10:41876314-41876888 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 282

Conread position: 9-480
Cow position: chr10:14886412-14885966 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 304
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 313, 54

Conread position: 11-564
Cow position: chr10:281225-280650 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 18

Conread position: 11-564
Cow position: chr10:32650167-32650702 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 163

Conread position: 12-530
Cow position: chr10:34318822-34318333 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 333
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 275, 137

Conread position: 12-564
Cow position: chr10:47906177-47906747 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 267

Conread position: 13-564
Cow position: chr10:19511041-19511575 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 162

Conread position: 16-337
Cow position: chr10:37040522-37040832 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 63

Conread position: 16-536
Cow position: chr10:22100675-22101183 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 157

Conread position: 16-558
Cow position: chr10:1374972-1375500 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 113

Conread position: 16-562
Cow position: chr10:37060362-37060891 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 16-564
Cow position: chr10:10581088-10581642 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 239

Conread position: 16-564
Cow position: chr10:19143907-19143369 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 132

Conread position: 16-564
Cow position: chr10:21486351-21486884 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 130

Conread position: 16-564
Cow position: chr10:29847185-29846640 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 132

Conread position: 18-558
Cow position: chr10:7283245-7282720 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 157

Conread position: 18-564
Cow position: chr10:38345939-38345393 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 135

Conread position: 19-564
Cow position: chr10:32577701-32578272 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 476

Conread position: 25-543
Cow position: chr10:123768-124258 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 40

Conread position: 30-558
Cow position: chr10:14859434-14859941 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 34

Conread position: 53-564
Cow position: chr10:41352286-41351785 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 335
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 34, 79

Conread position: 60-563
Cow position: chr10:57990486-57989995 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 46

Conread position: 76-558
Cow position: chr10:29633373-29632897 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 147

Conread position: 150-564
Cow position: chr10:25565703-25565276 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 216

Conread position: 173-452
Cow position: chr10:19715464-19715186 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 89

Conread position: 202-564
Cow position: chr10:54059737-54059385 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 243
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 92, 41

Conread position: 209-463
Cow position: chr10:15862674-15862428 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 241-530
Cow position: chr10:58596154-58596438 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 60, 22

Conread position: 258-563
Cow position: chr10:10478467-10478179 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 36, 86

Conread position: 258-564
Cow position: chr10:276256-276563 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 123

Conread position: 258-564
Cow position: chr10:25359065-25359368 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 36

Conread position: 263-395
Cow position: chr10:1938173-1938035 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 267-564
Cow position: chr10:42628347-42628630 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 27, 20

Conread position: 328-497
Cow position: chr10:50018322-50018157 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 41, 127

Conread position: 371-562
Cow position: chr10:20383760-20383576 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 395-564
Cow position: chr10:13366050-13365881 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 125, 107

Show alignments to all cow chromosomes.