Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-162 |
| Cow position: | chr12:8310391-8310555 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-162 |
| Cow position: | chr12:23238767-23238924 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 121 |
| Conread position: | 1-162 |
| Cow position: | chr12:26795521-26795688 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-221 |
| Cow position: | chr12:45260995-45261217 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 88, 80 |
| Conread position: | 1-226 |
| Cow position: | chr12:32182887-32183108 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-249 |
| Cow position: | chr12:21901322-21901576 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-285 |
| Cow position: | chr12:7424960-7425245 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 198 |
| Conread position: | 1-291 |
| Cow position: | chr12:22121065-22121347 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 209 |
| Conread position: | 1-455 |
| Cow position: | chr12:26947903-26947467 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 308 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 1-537 |
| Cow position: | chr12:2840243-2839728 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 42 |
| Conread position: | 1-557 |
| Cow position: | chr12:2281880-2282434 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 1-558 |
| Cow position: | chr12:6407303-6406757 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 175 |
| Conread position: | 1-562 |
| Cow position: | chr12:21197168-21197719 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 162 |
| Conread position: | 1-563 |
| Cow position: | chr12:22331966-22332515 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 249 |
| Conread position: | 1-564 |
| Cow position: | chr12:3360222-3360798 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr12:21207010-21207589 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 285 |
| Conread position: | 1-564 |
| Cow position: | chr12:21426014-21426588 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 240 |
| Conread position: | 1-564 |
| Cow position: | chr12:26141122-26141708 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 240 |
| Conread position: | 1-564 |
| Cow position: | chr12:37557871-37558449 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 286 |
| Conread position: | 1-564 |
| Cow position: | chr12:43032062-43031489 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 287 |
| Conread position: | 3-150 |
| Cow position: | chr12:15954340-15954192 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 83, 134 |
| Conread position: | 4-564 |
| Cow position: | chr12:22206395-22205852 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 160 |
| Conread position: | 5-260 |
| Cow position: | chr12:21058630-21058376 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 86 |
| Conread position: | 8-415 |
| Cow position: | chr12:21883339-21883774 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 397 |
| Conread position: | 11-209 |
| Cow position: | chr12:21940864-21941058 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 11-563 |
| Cow position: | chr12:8678767-8678229 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 132 |
| Conread position: | 13-564 |
| Cow position: | chr12:252703-252162 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 135 |
| Conread position: | 13-564 |
| Cow position: | chr12:1401847-1402385 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 16-260 |
| Cow position: | chr12:14663378-14663130 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 73, 133 |
| Conread position: | 16-564 |
| Cow position: | chr12:27933585-27933051 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 132 |
| Conread position: | 22-532 |
| Cow position: | chr12:1867834-1868328 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 147 |
| Conread position: | 23-558 |
| Cow position: | chr12:20998765-20998231 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 142 |
| Conread position: | 26-550 |
| Cow position: | chr12:42860449-42859932 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 127 |
| Conread position: | 40-564 |
| Cow position: | chr12:2196-2693 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 174 |
| Conread position: | 46-564 |
| Cow position: | chr12:11097629-11098136 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 54-564 |
| Cow position: | chr12:25101672-25101167 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 135-551 |
| Cow position: | chr12:15951778-15951380 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 85 |
| Conread position: | 150-564 |
| Cow position: | chr12:21255167-21254761 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 116 |
| Conread position: | 173-564 |
| Cow position: | chr12:32653052-32653439 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 89 |
| Conread position: | 204-551 |
| Cow position: | chr12:21901485-21901828 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 231-533 |
| Cow position: | chr12:21941342-21941639 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 251-536 |
| Cow position: | chr12:28766428-28766150 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 258-558 |
| Cow position: | chr12:48404638-48404934 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 35, 116 |
| Conread position: | 258-563 |
| Cow position: | chr12:8310772-8311079 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 212 |
| Conread position: | 258-564 |
| Cow position: | chr12:14663022-14662717 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 294-471 |
| Cow position: | chr12:42420784-42420607 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 170 |
| Conread position: | 352-564 |
| Cow position: | chr12:45261291-45261509 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 55, 122 |
| Conread position: | 363-536 |
| Cow position: | chr12:601356-601184 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 6, 104 |
Show alignments to all cow chromosomes.