Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-147 |
| Cow position: | chr13:5282979-5283119 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-169 |
| Cow position: | chr13:3059147-3058976 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-209 |
| Cow position: | chr13:34935979-34936190 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 186 |
| Conread position: | 1-238 |
| Cow position: | chr13:34692306-34692544 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 172 |
| Conread position: | 1-239 |
| Cow position: | chr13:33928397-33928172 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 1-285 |
| Cow position: | chr13:51763716-51764001 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 84, 198 |
| Conread position: | 1-386 |
| Cow position: | chr13:49972803-49973215 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 384 |
| Conread position: | 1-400 |
| Cow position: | chr13:676055-676477 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 172 |
| Conread position: | 1-452 |
| Cow position: | chr13:53833860-53834336 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 289 |
| Conread position: | 1-467 |
| Cow position: | chr13:2389708-2389214 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 240 |
| Conread position: | 1-500 |
| Cow position: | chr13:35029617-35030121 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 351 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 88, 217 |
| Conread position: | 1-523 |
| Cow position: | chr13:48356451-48356955 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 27 |
| Conread position: | 1-557 |
| Cow position: | chr13:20543233-20542699 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 88 |
| Conread position: | 1-558 |
| Cow position: | chr13:2909310-2908781 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 211 |
| Conread position: | 1-558 |
| Cow position: | chr13:13046676-13046155 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 163 |
| Conread position: | 1-562 |
| Cow position: | chr13:17307578-17308146 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 88 |
| Conread position: | 1-564 |
| Cow position: | chr13:2297702-2297125 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 1-564 |
| Cow position: | chr13:3276287-3276831 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 249 |
| Conread position: | 1-564 |
| Cow position: | chr13:4872166-4872750 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 24 |
| Conread position: | 1-564 |
| Cow position: | chr13:21841108-21840521 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr13:30245638-30245060 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 266 |
| Conread position: | 1-564 |
| Cow position: | chr13:31734983-31734407 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 248 |
| Conread position: | 1-564 |
| Cow position: | chr13:34143513-34142984 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 166 |
| Conread position: | 2-558 |
| Cow position: | chr13:62328448-62327914 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 241 |
| Conread position: | 9-564 |
| Cow position: | chr13:4940215-4940760 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 28 |
| Conread position: | 13-155 |
| Cow position: | chr13:44184915-44184772 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 13-536 |
| Cow position: | chr13:33337186-33336677 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 116 |
| Conread position: | 13-550 |
| Cow position: | chr13:15542599-15543125 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 160 |
| Conread position: | 13-562 |
| Cow position: | chr13:32544087-32544612 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 151 |
| Conread position: | 13-563 |
| Cow position: | chr13:32986943-32986377 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 276 |
| Conread position: | 13-564 |
| Cow position: | chr13:6669009-6668450 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 258 |
| Conread position: | 13-564 |
| Cow position: | chr13:15521389-15520840 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 136 |
| Conread position: | 13-564 |
| Cow position: | chr13:32738674-32738147 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 123 |
| Conread position: | 13-564 |
| Cow position: | chr13:34187554-34187014 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 206 |
| Conread position: | 13-564 |
| Cow position: | chr13:35756368-35756914 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 160 |
| Conread position: | 16-377 |
| Cow position: | chr13:33279209-33278854 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 284, 70 |
| Conread position: | 16-540 |
| Cow position: | chr13:30302209-30302716 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 16-558 |
| Cow position: | chr13:15925247-15924715 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-558 |
| Cow position: | chr13:31831756-31832269 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 216 |
| Conread position: | 16-564 |
| Cow position: | chr13:1594019-1593480 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr13:9043668-9044184 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 136 |
| Conread position: | 16-564 |
| Cow position: | chr13:31613199-31612662 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr13:34043226-34042691 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 148 |
| Conread position: | 21-556 |
| Cow position: | chr13:30657811-30657299 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 219 |
| Conread position: | 21-558 |
| Cow position: | chr13:34867878-34868442 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 371 |
| Conread position: | 25-337 |
| Cow position: | chr13:13323922-13324252 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 27-564 |
| Cow position: | chr13:2231801-2232333 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 363 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 30-564 |
| Cow position: | chr13:34692295-34692836 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 45-418 |
| Cow position: | chr13:61951354-61951721 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 45-564 |
| Cow position: | chr13:33825562-33825056 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 10 |
| Conread position: | 46-564 |
| Cow position: | chr13:3655141-3654637 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 63-558 |
| Cow position: | chr13:54283774-54284250 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 160 |
| Conread position: | 88-536 |
| Cow position: | chr13:4481694-4482122 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 76 |
| Conread position: | 150-564 |
| Cow position: | chr13:34326398-34326004 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 173-543 |
| Cow position: | chr13:50108751-50109116 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 180-559 |
| Cow position: | chr13:32525452-32525076 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 5, 145 |
| Conread position: | 186-562 |
| Cow position: | chr13:60704215-60703860 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 115, 7 |
| Conread position: | 212-559 |
| Cow position: | chr13:34936464-34936811 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 213-530 |
| Cow position: | chr13:30237502-30237815 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 225-564 |
| Cow position: | chr13:34912027-34911699 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 8 |
| Conread position: | 258-564 |
| Cow position: | chr13:33928179-33927889 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 260-564 |
| Cow position: | chr13:30140363-30140665 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 267-564 |
| Cow position: | chr13:3058617-3058319 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 202 |
| Conread position: | 299-564 |
| Cow position: | chr13:3338258-3338518 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 365-561 |
| Cow position: | chr13:2305980-2306173 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 372-517 |
| Cow position: | chr13:32606690-32606547 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.