Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-162 |
| Cow position: | chr14:47623597-47623761 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-169 |
| Cow position: | chr14:29049412-29049241 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-213 |
| Cow position: | chr14:30656287-30656077 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 1-221 |
| Cow position: | chr14:7831512-7831294 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 1-237 |
| Cow position: | chr14:9044447-9044688 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 1-260 |
| Cow position: | chr14:16418574-16418311 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 146, 76 |
| Conread position: | 1-260 |
| Cow position: | chr14:45304635-45304380 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 1-386 |
| Cow position: | chr14:10561596-10562006 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-430 |
| Cow position: | chr14:17241205-17241653 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 84, 265 |
| Conread position: | 1-435 |
| Cow position: | chr14:38145628-38146062 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 86 |
| Conread position: | 1-446 |
| Cow position: | chr14:2282960-2283422 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 240 |
| Conread position: | 1-457 |
| Cow position: | chr14:46463793-46464236 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 200 |
| Conread position: | 1-498 |
| Cow position: | chr14:41085783-41085328 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 154 |
| Conread position: | 1-558 |
| Cow position: | chr14:44129951-44130464 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 1-558 |
| Cow position: | chr14:44225400-44225953 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 237 |
| Conread position: | 1-559 |
| Cow position: | chr14:23260941-23260385 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 347 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 113 |
| Conread position: | 1-559 |
| Cow position: | chr14:40338692-40339251 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 111 |
| Conread position: | 1-562 |
| Cow position: | chr14:33394839-33394228 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 396 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 84, 517 |
| Conread position: | 1-562 |
| Cow position: | chr14:45205072-45205619 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 372 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 73, 109 |
| Conread position: | 1-563 |
| Cow position: | chr14:30597410-30596832 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 392 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 262 |
| Conread position: | 1-563 |
| Cow position: | chr14:44685030-44685597 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 1-563 |
| Cow position: | chr14:45159840-45160413 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 268 |
| Conread position: | 1-564 |
| Cow position: | chr14:11467607-11468154 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 62 |
| Conread position: | 1-564 |
| Cow position: | chr14:13272250-13272808 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 114 |
| Conread position: | 1-564 |
| Cow position: | chr14:13660972-13660439 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 166 |
| Conread position: | 1-564 |
| Cow position: | chr14:17492487-17491907 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr14:23691220-23690675 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 1-564 |
| Cow position: | chr14:45673079-45672495 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr14:45767028-45767556 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 166 |
| Conread position: | 1-564 |
| Cow position: | chr14:46083626-46084174 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 3-513 |
| Cow position: | chr14:41406841-41407347 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 333 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 85 |
| Conread position: | 3-558 |
| Cow position: | chr14:35928182-35928721 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 372 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 3-558 |
| Cow position: | chr14:43552415-43552966 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 348 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 4-536 |
| Cow position: | chr14:50109587-50110103 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 110 |
| Conread position: | 4-558 |
| Cow position: | chr14:44856410-44855881 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 8-542 |
| Cow position: | chr14:30585965-30585411 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 278 |
| Conread position: | 9-555 |
| Cow position: | chr14:44780907-44780376 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 188 |
| Conread position: | 9-562 |
| Cow position: | chr14:44783247-44782709 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 188 |
| Conread position: | 9-564 |
| Cow position: | chr14:41754877-41755411 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 11-564 |
| Cow position: | chr14:37222908-37223452 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 163 |
| Conread position: | 13-468 |
| Cow position: | chr14:44551056-44551511 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 210 |
| Conread position: | 13-543 |
| Cow position: | chr14:44376436-44376964 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 50 |
| Conread position: | 13-564 |
| Cow position: | chr14:7471385-7471924 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 154 |
| Conread position: | 13-564 |
| Cow position: | chr14:13302038-13302580 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 13-564 |
| Cow position: | chr14:16274288-16273746 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 135 |
| Conread position: | 13-564 |
| Cow position: | chr14:45833173-45833710 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 126 |
| Conread position: | 16-543 |
| Cow position: | chr14:48255300-48254780 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 151 |
| Conread position: | 16-563 |
| Cow position: | chr14:20781471-20782005 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr14:5528079-5528611 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr14:17002036-17001505 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 124 |
| Conread position: | 16-564 |
| Cow position: | chr14:17684415-17684945 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr14:19329254-19328719 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr14:22032666-22032136 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 16-564 |
| Cow position: | chr14:28994846-28994305 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 123 |
| Conread position: | 21-558 |
| Cow position: | chr14:35388121-35387586 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 220 |
| Conread position: | 21-564 |
| Cow position: | chr14:11155136-11154605 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 146 |
| Conread position: | 35-209 |
| Cow position: | chr14:42403927-42404104 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 46-450 |
| Cow position: | chr14:50133946-50134348 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 211 |
| Conread position: | 48-564 |
| Cow position: | chr14:749588-750119 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 193 |
| Conread position: | 54-542 |
| Cow position: | chr14:22018436-22018933 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 215 |
| Conread position: | 66-526 |
| Cow position: | chr14:45916444-45916911 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 133 |
| Conread position: | 90-564 |
| Cow position: | chr14:38533217-38532745 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 77 |
| Conread position: | 94-557 |
| Cow position: | chr14:36967364-36967799 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 124 |
| Conread position: | 146-564 |
| Cow position: | chr14:9044700-9045115 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 23 |
| Conread position: | 197-564 |
| Cow position: | chr14:16920502-16920139 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 269 |
| Conread position: | 204-564 |
| Cow position: | chr14:47623760-47624119 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 206-551 |
| Cow position: | chr14:12608424-12608745 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 212-547 |
| Cow position: | chr14:45079736-45080069 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 84, 50 |
| Conread position: | 213-470 |
| Cow position: | chr14:44261890-44261634 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 43 |
| Conread position: | 240-543 |
| Cow position: | chr14:34774829-34775123 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 77, 22 |
| Conread position: | 241-564 |
| Cow position: | chr14:47921244-47921556 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 258-450 |
| Cow position: | chr14:1499996-1500192 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 258-558 |
| Cow position: | chr14:45712736-45712431 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 86 |
| Conread position: | 258-564 |
| Cow position: | chr14:23256600-23256909 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 36, 203 |
| Conread position: | 258-564 |
| Cow position: | chr14:29048651-29048352 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 36, 61 |
| Conread position: | 258-564 |
| Cow position: | chr14:45850471-45850775 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 199 |
| Conread position: | 266-455 |
| Cow position: | chr14:13326858-13326666 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 269-558 |
| Cow position: | chr14:7831280-7830994 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 49 |
| Conread position: | 270-500 |
| Cow position: | chr14:13778119-13778350 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 199 |
| Conread position: | 275-456 |
| Cow position: | chr14:15277597-15277407 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 307-564 |
| Cow position: | chr14:44421852-44422105 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 133 |
| Conread position: | 328-557 |
| Cow position: | chr14:42151640-42151867 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 393-564 |
| Cow position: | chr14:13622229-13622062 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 396-563 |
| Cow position: | chr14:45303976-45303813 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 406-564 |
| Cow position: | chr14:37414554-37414398 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 60 |
Show alignments to all cow chromosomes.